View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0676_low_45 (Length: 204)
Name: NF0676_low_45
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0676_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 185
Target Start/End: Original strand, 21672349 - 21672498
Alignment:
| Q |
36 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccacca |
135 |
Q |
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| T |
21672349 |
tatactatacacagtctcttttcaactcggcggtgacggcggcatacaccagcaacctgacgttattgtgacaacatcatggcgtaagatttaaccatca |
21672448 |
T |
|
| Q |
136 |
cgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaatt |
185 |
Q |
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| T |
21672449 |
tgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaatt |
21672498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 39406753 - 39406601
Alignment:
| Q |
34 |
attatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatcagggcgtaggatgtaaccac |
133 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| || || ||||| ||||||||| |||| ||| | |||||||||||||||||| |||||| |
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| T |
39406753 |
attatactatacacggtctcttttcaactcggcggcgactgcggcgtacaccggcaacctgacattattgtgatagcatcagggcgtaggatttaaccat |
39406654 |
T |
|
| Q |
134 |
cacgaagtggttattttcgatctcagtgatgaagttttgctcattcgaaattg |
186 |
Q |
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||| |||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
39406653 |
cacaaagtggttattttcgatctcagtgatgaagctttgctcgttcgaaattg |
39406601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 1e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 50430994 - 50430858
Alignment:
| Q |
36 |
tatactatacaccatctcttttcaactcggcggcgacggcagcatacactagcaacctgatattactgtaacagcatca-gggcgtaggatgtaaccacc |
134 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| || ||||| | |||| ||| ||||||| ||| ||||| ||| ||||||| |||| | | |
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| T |
50430994 |
tatactatacaccgtctcttttcaactcggcggcgacggcggcgtacacaaacaacttgacgttactgtgacaacatcaggggtgtaggatttaacaatc |
50430895 |
T |
|
| Q |
135 |
acgaagtggttattttcgatctcagtgatgaagtttt |
171 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
50430894 |
acgaagtggttattttcgatctcagtgatgaagtttt |
50430858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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