View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_5 (Length: 518)

Name: NF0676_low_5
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_5
NF0676_low_5
[»] chr6 (2 HSPs)
chr6 (307-510)||(6761198-6761401)
chr6 (100-295)||(6761443-6761638)
[»] chr4 (3 HSPs)
chr4 (320-440)||(9764652-9764772)
chr4 (220-252)||(47064493-47064525)
chr4 (220-252)||(53301943-53301975)
[»] chr8 (1 HSPs)
chr8 (216-252)||(25640570-25640606)
[»] chr3 (1 HSPs)
chr3 (216-252)||(7404554-7404590)
[»] chr2 (3 HSPs)
chr2 (220-252)||(30268617-30268649)
chr2 (216-252)||(31332385-31332421)
chr2 (216-252)||(31339115-31339151)


Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 307 - 510
Target Start/End: Complemental strand, 6761401 - 6761198
Alignment:
Q  307 actttggtttatgctctacctccggcaaaattttctaccaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgcttaatttgtag 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6761401 actttggtttatgctctacctccggcaaaattttctaccaaattgtagtgcaaatacaattgtatggatcatcatctactttggtttgctaaatttgtag 6761302  T
Q  407 tagatgaaatttgatttgatttatgtgattatggtctgtatcaagctattatatggagatataaagagaggtgtgatgtttctgctcatttatctagaat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6761301 tagatgaaatttgatttgatttatgtgattatggtctgtatcaagctattatatggagatataaagagaggtgtgttgtttctgctcatttatctagaat 6761202  T
Q  507 tatc 510  Q
    ||||    
T  6761201 tatc 6761198  T

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Target: chr6; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 100 - 295
Target Start/End: Complemental strand, 6761638 - 6761443
Alignment:
Q  100 aaaagttctttatttggaaattttgacttcgagttgcgtacactcagcttattgacttgaaatatgacacttataacttattttgtgatagtgttcacac 199  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6761638 aaaagttctttatttggaaagtttgacttcgagttgtgtacactcatcttattgacttgaaatatgacacttataacttattttttgatagtgttcacac 6761539  T
Q  200 ccctacttttctatgtaatgtatgtgattagttgtttggatgatttatgtgtgcaatcctcactttcagattcatacaagaaaagttcattactag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6761538 ccctacttttctatgtaatgtatgtgattagttgtttggatgatttatgtgtgcaatcctcactttcagattcatacaagaaaagttcattactag 6761443  T

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Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 9764772 - 9764652
Alignment:
Q  320 ctctacctccggcaaaattttctaccaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgcttaatttgtagtagatgaaatttg 419  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  9764772 ctctacatctggcaaaattttctactaaattgttgtgcaaatacaattgtatggatcatcatctactttggtttgctaattttgtagtagatgaaatttg 9764673  T
Q  420 atttgatttatgtgattatgg 440  Q
    ||||| |||||||||||||||    
T  9764672 atttggtttatgtgattatgg 9764652  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 47064493 - 47064525
Alignment:
Q  220 tatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||| ||||||||||||||||||||||||||    
T  47064493 tatgtgtttagttgtttggatgatttatgtgtg 47064525  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 53301975 - 53301943
Alignment:
Q  220 tatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||| ||||||||||||||||||||||||||    
T  53301975 tatgtgtttagttgtttggatgatttatgtgtg 53301943  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 25640606 - 25640570
Alignment:
Q  216 aatgtatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||||||| |||||||||||| |||||||||||||    
T  25640606 aatgtatgtgtttagttgtttggctgatttatgtgtg 25640570  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 7404554 - 7404590
Alignment:
Q  216 aatgtatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||||||| |||||||||||| |||||||||||||    
T  7404554 aatgtatgtgtttagttgtttggctgatttatgtgtg 7404590  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 30268649 - 30268617
Alignment:
Q  220 tatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||| ||||||||||||||||||||||||||    
T  30268649 tatgtgtttagttgtttggatgatttatgtgtg 30268617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 31332385 - 31332421
Alignment:
Q  216 aatgtatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||||||| |||||||||||| |||||||||||||    
T  31332385 aatgtatgtgtttagttgtttggctgatttatgtgtg 31332421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 31339115 - 31339151
Alignment:
Q  216 aatgtatgtgattagttgtttggatgatttatgtgtg 252  Q
    |||||||||| |||||||||||| |||||||||||||    
T  31339115 aatgtatgtgtttagttgtttggctgatttatgtgtg 31339151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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