View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_6 (Length: 508)

Name: NF0676_low_6
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_6
NF0676_low_6
[»] chr7 (19 HSPs)
chr7 (30-500)||(26204812-26205282)
chr7 (222-500)||(26224449-26224726)
chr7 (354-506)||(26298369-26298521)
chr7 (354-508)||(26251767-26251921)
chr7 (354-500)||(26129497-26129643)
chr7 (354-500)||(26156118-26156264)
chr7 (354-508)||(26180002-26180156)
chr7 (354-500)||(26243327-26243473)
chr7 (354-500)||(26278623-26278769)
chr7 (354-500)||(26121242-26121388)
chr7 (354-508)||(19102621-19102775)
chr7 (354-500)||(26192192-26192338)
chr7 (114-183)||(26224718-26224787)
chr7 (114-202)||(4682341-4682429)
chr7 (30-85)||(26224788-26224843)
chr7 (416-500)||(26302736-26302820)
chr7 (466-508)||(26187167-26187209)
chr7 (354-402)||(26208442-26208490)
chr7 (354-402)||(26227996-26228044)
[»] chr4 (3 HSPs)
chr4 (354-480)||(44904200-44904326)
chr4 (102-218)||(8239014-8239130)
chr4 (102-202)||(53303244-53303345)
[»] chr8 (2 HSPs)
chr8 (114-202)||(25641759-25641847)
chr8 (39-164)||(6634335-6634467)
[»] chr2 (3 HSPs)
chr2 (102-202)||(30269851-30269951)
chr2 (114-202)||(31331341-31331430)
chr2 (114-202)||(31338062-31338151)
[»] chr5 (3 HSPs)
chr5 (39-202)||(5075279-5075446)
chr5 (39-161)||(37191124-37191252)
chr5 (39-219)||(7413754-7413938)
[»] chr3 (1 HSPs)
chr3 (146-202)||(7400906-7400962)


Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 30 - 500
Target Start/End: Complemental strand, 26205282 - 26204812
Alignment:
Q  30 ttgaaacggttttgttttagtggaatagaaatgtgttttggtataaatgctaccaagttagtaataaacaccaaaaagagcgttactaatgtaatactta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26205282 ttgaaacggttttgttttagtggaatagaaatgtgttttggtatacatgctaccaagttagtaataaacactaaaaagagcgttactaatgtaatactta 26205183  T
Q  130 ttaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgtt-actaaaacatgtaaatgtattagtgatcatgttac 228  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  26205182 ttaaaaaatgttagagaaatcttcatattagtaactataaactaaatgttgcaaggtgaatgtttactaaaacatgtaaatgtattagtgatcatgttac 26205083  T
Q  229 aaaaccaaaaaacttttataaaatcacaccagctgcaactcctagagcaataatatttaaattaatgtcatcaactcaacctcaaattcaattatctaat 328  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  26205082 aaaaccaaaaaacttttataaaatcacaccagctgcaactcgtagagcaataatatt-aaattaatgtcatcaactcatcctcaaattcaattatctaat 26204984  T
Q  329 ctggttttttcaagttctctagcaatcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctct 428  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||    
T  26204983 ctggttttttcaagttctctagcaatcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatagtcttct 26204884  T
Q  429 tggcagcctcgctaagtttctttgctctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||||| || | ||| |||||||||||||||||||||||||||||| ||||||   |||||||||| ||||    
T  26204883 tggcagcatcaccaagcttctttgctctcatcctcatttctttgctcacttggccatttcccatcaatatct 26204812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 222 - 500
Target Start/End: Complemental strand, 26224726 - 26224449
Alignment:
Q  222 atgttacaaaaccaaaaaacttttataaaatcacaccagctgcaactcctagagcaataatatttaaattaatgtcatcaactcaacctcaaattcaatt 321  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  26224726 atgttgcaaaaccaaaaaacttttataaaatcacaccagctgcaactcctagagcaataatatt-aaattaatgtcatcaactcatcctcaaattcaatt 26224628  T
Q  322 atctaatctggttttttcaagttctctagcaatcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctata 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||    
T  26224627 atctaatctggttttttcaagttctctagcaatcttcaatgattttagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctctata 26224528  T
Q  422 gtcctcttggcagcctcgctaagtttctttgctctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||| |||| ||||| || | ||| ||||||||||||||||||||  |||| | |||||| |  ||||||||||| ||||    
T  26224527 gtcttctttgcagcatcaccaagcttctttgctctcatcctcatcacttttccctcttgaccacttcccatcaatatct 26224449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 506
Target Start/End: Complemental strand, 26298521 - 26298369
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26298521 tcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcctcgctaagtttctttgc 26298422  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatcttcacag 506  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26298421 tctcatcctcatttctttgctctcttggccgcttcccatcaaaatcttcacag 26298369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 354 - 508
Target Start/End: Complemental strand, 26251921 - 26251767
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| || |||| ||||||||||||    
T  26251921 tcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctctatcgtccttttggctgcatcgccaagtttctttgc 26251822  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatcttcacagcc 508  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  26251821 tctcatcctcatttctttgctctcttggcaacttcccatcaaaatcttaacagcc 26251767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26129643 - 26129497
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||||||| | ||| || |||||    
T  26129643 tcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggcagcctcaccaagcttttttgc 26129544  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  26129543 tctcatcctcatttctttgctctcttggccgcttcccatcaaaatct 26129497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26156264 - 26156118
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || | ||||||||||||    
T  26156264 tcttcaatgatttcagatcatcaatcaactgaatcaagttgttgtaagaatctccaccttcttctatagtcctcttggcagcatcaccaagtttctttgc 26156165  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||| ||||||| ||||||||||||||   ||||||||||||||||    
T  26156164 tctcaccctcattgctttgctctcttggtcacttcccatcaaaatct 26156118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 354 - 508
Target Start/End: Complemental strand, 26180156 - 26180002
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| ||| || | ||||||||||||    
T  26180156 tctttaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccttcctcaatagtcctcttggaagcatcaccaagtttctttgc 26180057  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatcttcacagcc 508  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||| ||||||    
T  26180056 tctcatcctcatttctttgctctcttggtcacttcccatcaaaatctttacagcc 26180002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26243473 - 26243327
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||| |||||||| || | ||||||||||||    
T  26243473 tcttcaacgatttcagctcatcaatcaactgaatcaagttgttgtaagaatctccaccctcctctatagtccttttggcagcatcaccaagtttctttgc 26243374  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  26243373 tctcatcctcatttctttgctctcttggccacttcccatcaaaatct 26243327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26278769 - 26278623
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||||| | |||||||||||||||||||| || | ||||||||||||    
T  26278769 tcttcaatgatttcagctcatcaatcaattgaatcaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcaccaagtttctttgc 26278670  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||    
T  26278669 tctcatcctcatttctttgctctcttggctaattcccatcaaaatct 26278623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26121388 - 26121242
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| | | |||||| |||||||||||||||| | ||||||||||||    
T  26121388 tcttcaatgatttcagctcatcaatcaactgaatcaagttgttgtaagaatgtccacgttcctctataatcctcttggcagcctcaccaagtttctttgc 26121289  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||||| |||||||||||||||||||||  |||||||| |||||||    
T  26121288 tctcatcatcatttctttgctctcttggccacttcccattaaaatct 26121242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 354 - 508
Target Start/End: Original strand, 19102621 - 19102775
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||| | ||||||  | |||||||||||||| ||||| || | ||| ||||||||    
T  19102621 tcttcaatgatttcagctcatcaatcaacagaatcaagttgttgtgagagtgtccaccctcctctatagtcctctttgcagcatcaccaagcttctttgc 19102720  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatcttcacagcc 508  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| |||||||    
T  19102721 tctcatcctcatttctttgctctcttggccacttcccatcaaaatctccacagcc 19102775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 354 - 500
Target Start/End: Complemental strand, 26192338 - 26192192
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||| |||| ||||||| | |||||||||||||||| ||| || | ||||||||||||    
T  26192338 tcttcagtgatttcagctcatcaatgaactgaatcaagttgttgtatgaatgtccaccttcctctatagtcctcttggaagcatcaccaagtttctttgc 26192239  T
Q  454 tctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||    
T  26192238 tctcatcctcatttctttgctctcttgtccacttcccatcaaaatct 26192192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 26224787 - 26224718
Alignment:
Q  114 actaatgtaatacttattaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaa 183  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26224787 actaatgtaacacttattaaaaaatgttagagaaatctttatattagtaactataaaataaatgttgcaa 26224718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 4682429 - 4682341
Alignment:
Q  114 actaatgtaatacttattaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||||||||  ||| || ||||||||||| |||||||||||||||    
T  4682429 actaatgtaacacttactaaaaaatgttagaaaaatctctatattagtaactattaaacaagtgttgcaagataaatgttactaaaaca 4682341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 26224843 - 26224788
Alignment:
Q  30 ttgaaacggttttgttttagtggaatagaaatgtgttttggtataaatgctaccaa 85  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  26224843 ttgaaacggttttgttttagtggaatagaaatgtgttgtgatataaatgctaccaa 26224788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 500
Target Start/End: Complemental strand, 26302820 - 26302736
Alignment:
Q  416 tctatagtcctcttggcagcctcgctaagtttctttgctctcatcctcatttctttgctctcttggctgcttcccatcaaaatct 500  Q
    |||||||||||||||| |||  | | ||| || || ||| || ||||||||||||||||||||||||   |||||||||||||||    
T  26302820 tctatagtcctcttggaagcagcaccaagatttttagctttcttcctcatttctttgctctcttggccatttcccatcaaaatct 26302736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 466 - 508
Target Start/End: Complemental strand, 26187209 - 26187167
Alignment:
Q  466 ttctttgctctcttggctgcttcccatcaaaatcttcacagcc 508  Q
    |||||| ||||||||||  ||||||||||||||||||||||||    
T  26187209 ttcttttctctcttggccacttcccatcaaaatcttcacagcc 26187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 26208490 - 26208442
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaaga 402  Q
    |||||||||||||||| ||||| || || || |||||||||||||||||    
T  26208490 tcttcaatgattttaggtcatctattaattgcatcaagttgttgtaaga 26208442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 402
Target Start/End: Complemental strand, 26228044 - 26227996
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaaga 402  Q
    |||||||||||||||| ||||| || || || |||||||||||||||||    
T  26228044 tcttcaatgattttaggtcatctattaattgcatcaagttgttgtaaga 26227996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 354 - 480
Target Start/End: Complemental strand, 44904326 - 44904200
Alignment:
Q  354 tcttcaatgattttagctcatcaatcaactgaatcaagttgttgtaagaatctccacctccttctatagtcctcttggcagcctcgctaagtttctttgc 453  Q
    ||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||| | |||||||||||||||||||| |||| ||  || |||||    
T  44904326 tcttcaatgatttcagctcatctatcaactgaaccaagttgttgtaagagtgtccaccttcctctatagtcctcttggcagcatcgccaaacttttttgc 44904227  T
Q  454 tctcatcctcatttctttgctctcttg 480  Q
    |||| |||||||||||||||| |||||    
T  44904226 tctcgtcctcatttctttgctgtcttg 44904200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 8239014 - 8239130
Alignment:
Q  102 aaaaagagcgttactaatgtaatacttattaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaac 201  Q
    |||||||| |||||||||| || |||||||||||||||||||| |||||| ||||||||||||||  ||| || ||||||||||||||||||||||||||    
T  8239014 aaaaagagtgttactaatgcaacacttattaaaaaatgttagaaaaatctctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaac 8239113  T
Q  202 atgtaaatgtattagtg 218  Q
    || || ||||| |||||    
T  8239114 atatatatgtactagtg 8239130  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 53303244 - 53303345
Alignment:
Q  102 aaaaagagcgttactaatgtaatacttattaaaaaatgttagagaaatctttatattagtaacta-aaaaataaatgttgcaagatgaatgttactaaaa 200  Q
    |||||||| |||||||||| || |||||||||||||||||||| |||||| ||||||||||||||   ||| || ||||||||||| |||||||||||||    
T  53303244 aaaaagagtgttactaatgcaacacttattaaaaaatgttagaaaaatctctatattagtaactacttaaacaagtgttgcaagataaatgttactaaaa 53303343  T
Q  201 ca 202  Q
    ||    
T  53303344 ca 53303345  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 114 - 202
Target Start/End: Original strand, 25641759 - 25641847
Alignment:
Q  114 actaatgtaatacttattaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||||||| ||||| |||||||||||||| |||||| ||||||||||||||  ||| || |||||||||||||||||||||||||||    
T  25641759 actaatgtaacacttactaaaaaatgttagaaaaatctctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 25641847  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 164
Target Start/End: Original strand, 6634335 - 6634467
Alignment:
Q  39 ttttgttttagtggaatagaaatgtgttttggtataaatg-ctaccaagttagtaata--aacacca----aaaagagcgttactaatgtaatacttatt 131  Q
    |||||||||||||||||||||||||||| || ||||||   |||| || |||||||||  ||||| |    ||||||  ||||| ||||||| |||||||    
T  6634335 ttttgttttagtggaatagaaatgtgttctgatataaaacactactaaattagtaatattaacactactgaaaaagaaagttaccaatgtaacacttatt 6634434  T
Q  132 aaaaaatgttagagaaatctttatattagtaac 164  Q
    ||||||||||||| |||||| ||||||||||||    
T  6634435 aaaaaatgttagaaaaatctctatattagtaac 6634467  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 30269851 - 30269951
Alignment:
Q  102 aaaaagagcgttactaatgtaatacttattaaaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaac 201  Q
    |||||||| |||||||||| || |||||||||||||||||||  |||||| ||||||||||||||  ||| || |||||||| |||||||||||||||||    
T  30269851 aaaaagagtgttactaatgcaacacttattaaaaaatgttagtaaaatctctatattagtaactattaaacaagtgttgcaatatgaatgttactaaaac 30269950  T
Q  202 a 202  Q
    |    
T  30269951 a 30269951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 31331430 - 31331341
Alignment:
Q  114 actaatgtaatacttattaaaaaatgtta-gagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||||||| ||||| |||||||||||| || |||||| ||||||||||||||  ||| || |||||||||||||||||||||||||||    
T  31331430 actaatgtaacacttactaaaaaatgttaagaaaaatctctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 31331341  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 202
Target Start/End: Complemental strand, 31338151 - 31338062
Alignment:
Q  114 actaatgtaatacttattaaaaaatgtta-gagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||||||| ||||| |||||||||||| || |||||| ||||||||||||||  ||| || |||||||||||||||||||||||||||    
T  31338151 actaatgtaacacttactaaaaaatgttaagaaaaatctctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 31338062  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 5075446 - 5075279
Alignment:
Q  39 ttttgttttagtggaatagaaatgtgttttggtataaatgctaccaagttagtaata--aacacc----aaaaagagcgttactaatgtaatacttatta 132  Q
    ||||||||||||||||||  |||||||| || ||||||  |||| ||||||||||||  |||||     |||| ||| ||||| ||||||| |||| |||    
T  5075446 ttttgttttagtggaata--aatgtgttatgatataaacactactaagttagtaatattaacactcctgaaaatgagtgttaccaatgtaacacttctta 5075349  T
Q  133 aaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||||||||| ||||||||||||| ||||| |  || ||| ||||||||| ||||||||| |||||||    
T  5075348 aaaaatgttagaaaaatctttatattggtaaccattaagtaagtgttgcaaggtgaatgttattaaaaca 5075279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 161
Target Start/End: Original strand, 37191124 - 37191252
Alignment:
Q  39 ttttgttttagtggaatagaaatgtgttttggtataaatgctaccaagttagtaata--aacacca----aaaagagcgttactaatgtaatacttatta 132  Q
    ||||||||||||||||||||||||||||  | ||||||  |||| ||||||||||||  ||||  |    ||||||| ||||| ||||||| ||||||||    
T  37191124 ttttgttttagtggaatagaaatgtgttcggatataaacactactaagttagtaatattaacagtactgaaaaagagtgttaccaatgtaacacttatta 37191223  T
Q  133 aaaaatgttagagaaatctttatattagt 161  Q
    |||||||||| | |||||| |||||||||    
T  37191224 aaaaatgttaaaaaaatctctatattagt 37191252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 7413754 - 7413938
Alignment:
Q  39 ttttgttttagtggaatagaaatgtgttttggtataaatgctaccaagttagtaata--aacacc----aaaaagagcgttactaatgtaatacttatta 132  Q
    ||||||||||| ||||||  |||||||| || ||||||  |||| ||||||||||||  |||||     ||||||||| |||| ||||||| ||||||||    
T  7413754 ttttgttttagaggaata--aatgtgttatgatataaacactactaagttagtaatattaacactcctgaaaaagagcattaccaatgtaacacttatta 7413851  T
Q  133 aaaaatgttagagaaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaacatgtaaatgtattagtga 219  Q
    ||||| |||||| |||| | ||||||| |||| |  || ||| ||||| ||| |||||||||||||||||  ||| |||| ||||||    
T  7413852 aaaaaggttagaaaaatttctatattaataaccattaagtaagtgttgtaaggtgaatgttactaaaacacataagtgtagtagtga 7413938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 7400962 - 7400906
Alignment:
Q  146 aaatctttatattagtaactaaaaaataaatgttgcaagatgaatgttactaaaaca 202  Q
    |||||| ||||||||||||||  ||| || |||||||||||||||||||||||||||    
T  7400962 aaatctctatattagtaactattaaacaagtgttgcaagatgaatgttactaaaaca 7400906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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