View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0676_low_7 (Length: 476)

Name: NF0676_low_7
Description: NF0676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0676_low_7
NF0676_low_7
[»] chr7 (6 HSPs)
chr7 (60-476)||(25540363-25540779)
chr7 (253-457)||(25517048-25517251)
chr7 (249-474)||(25524830-25525049)
chr7 (60-234)||(25534070-25534248)
chr7 (60-249)||(25516165-25516359)
chr7 (60-234)||(25526068-25526246)
[»] chr2 (1 HSPs)
chr2 (263-307)||(44461024-44461068)


Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 60 - 476
Target Start/End: Complemental strand, 25540779 - 25540363
Alignment:
Q  60 catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540779 catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatacttggtttactttcaa 25540680  T
Q  160 atgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt 259  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540679 atgcatcgagtttcctaagaacacattcatttacctaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagttagtagtcctt 25540580  T
Q  260 tagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcagtgaa 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540579 tagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcctcagtgaa 25540480  T
Q  360 attggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgttggctcct 459  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25540479 attggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgttggctcct 25540380  T
Q  460 tttctataatatcagta 476  Q
    |||||||||||||||||    
T  25540379 tttctataatatcagta 25540363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 253 - 457
Target Start/End: Original strand, 25517048 - 25517251
Alignment:
Q  253 agtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgttcct 352  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| | |||||||||||    
T  25517048 agtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttt-taatggtaaatatgatagatggaataggtaacgttcct 25517146  T
Q  353 cagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatgatgtt 452  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| |||||||    
T  25517147 cagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttttttctgatgtt 25517246  T
Q  453 ggctc 457  Q
    |||||    
T  25517247 ggctc 25517251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 249 - 474
Target Start/End: Complemental strand, 25525049 - 25524830
Alignment:
Q  249 tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt 348  Q
    |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||| ||| | | | |      || |||||||||||||| ||||| |    
T  25525049 tagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttta------atatgatagatggaacaggtaacat 25524956  T
Q  349 tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatga 448  Q
    ||||||||||||||||||  |||||||||  ||||||||| ||| ||||||||| ||||||| ||||||||||||||| | ||||||||||||||| |||    
T  25524955 tcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagttttttctga 25524856  T
Q  449 tgttggctccttttctataatatcag 474  Q
    ||||||||||||||||||||||||||    
T  25524855 tgttggctccttttctataatatcag 25524830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 25534248 - 25534070
Alignment:
Q  60 catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac 153  Q
    |||| ||| ||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| |||||||||  ||| ||||||||      |||||||||||    
T  25534248 catcttcaataattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagttgcatagaaaaggtacacattcagttacttggtttac 25534150  T
Q  154 tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca 234  Q
    |||||||||||||||| ||||||||||||||||||  ||| ||| |||||||||| |||||||| ||||||||||||||||    
T  25534149 tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtaccttt-atatacaaatatgttgttagaagca 25534070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 60 - 249
Target Start/End: Original strand, 25516165 - 25516359
Alignment:
Q  60 catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacat------acttggtttac 153  Q
    ||||||||||||||||||| ||||||||||| ||||  |||||||||||| | | ||||   |||||||||||| ||||||||      |||||||||||    
T  25516165 catcatcagtaatttccaaacttcatgactatgaatcgaagagtcaattagaaa-aacatgtttgcatatgaaaggtacacattcagttacttggtttac 25516263  T
Q  154 tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagcaacactgtatcaagtt 249  Q
    |||||||||||||||| ||||||||||||||| ||  ||| ||||||| |||| ||| |||||||||||| ||||||| | ||| |||||| ||||    
T  25516264 tttcaaatgcatcgaggttcctaagaacacatccagctactgaacatgcacctgtcagatacaactatgtagttagaatctacattgtatctagtt 25516359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 25526246 - 25526068
Alignment:
Q  60 catcatcagtaatttccaatcttcatgactacgaatgaaagagtcaattaaagataacacagttgcatatgaaacgtacacatac------ttggtttac 153  Q
    |||| ||||||||| ||||| |||||||||| ||||| |||||||||||| ||| |||| || ||||||||||| | |||||| |      || ||||||    
T  25526246 catcttcagtaattgccaatgttcatgactatgaatggaagagtcaattagaga-aacatagctgcatatgaaatgcacacattcagttagtttgtttac 25526148  T
Q  154 tttcaaatgcatcgagtttcctaagaacacattcatttaccgaacatgtacctttcatatacaactatgttgttagaagca 234  Q
    |||||||||||||||| ||||||||||||||||||  ||| ||| ||||||| ||||||||||| ||||| ||||||||||    
T  25526147 tttcaaatgcatcgagattcctaagaacacattcagctactgaatatgtacc-ttcatatacaaatatgtcgttagaagca 25526068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 44461068 - 44461024
Alignment:
Q  263 ctttgaggattcgagtgctcgcaacaaatgcaactctaggagctg 307  Q
    ||||||||||| ||||||| ||||||||||||||||||| |||||    
T  44461068 ctttgaggattggagtgcttgcaacaaatgcaactctagcagctg 44461024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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