View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_high_10 (Length: 382)

Name: NF0678_high_10
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_high_10
NF0678_high_10
[»] chr2 (2 HSPs)
chr2 (74-348)||(40900453-40900743)
chr2 (185-348)||(6706169-6706334)
[»] chr7 (2 HSPs)
chr7 (82-204)||(21590285-21590407)
chr7 (244-322)||(21590207-21590285)
[»] chr5 (2 HSPs)
chr5 (185-348)||(40681561-40681726)
chr5 (21-50)||(40681095-40681124)
[»] chr1 (1 HSPs)
chr1 (185-348)||(15496561-15496726)
[»] scaffold0092 (1 HSPs)
scaffold0092 (174-348)||(23581-23752)
[»] chr6 (1 HSPs)
chr6 (244-347)||(2239220-2239323)
[»] chr4 (2 HSPs)
chr4 (177-231)||(22335259-22335313)
chr4 (85-133)||(42677455-42677503)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 74 - 348
Target Start/End: Original strand, 40900453 - 40900743
Alignment:
Q  74 ttagtcatggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattgg 173  Q
    |||||||  ||||||||||| |||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||    
T  40900453 ttagtcaatgttgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgtttttaatgacagtaacaaaagtggttcttgatagaattgg 40900552  T
Q  174 a----------acccaccatgaactacgttgagaaccaccacaaaaaactaacagcagc------accaccacagaccccacagagaaccatcacaaacc 257  Q
    |          | |||||||||||||||  ||||||||||||||||||||| || || |      ||||||||| | ||||| || |||||||| |||||    
T  40900553 aatccaccacgaaccaccatgaactacgccgagaaccaccacaaaaaactagcaacaccaccacgaccaccacaaaacccactgaaaaccatcataaacc 40900652  T
Q  258 accgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 348  Q
    ||| ||||||| ||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||| |||||| |||| |||||||||    
T  40900653 accacaaaaacacagcaaactaacatcaccatgaatgtcaacgatggagaaaacaaccgctgagagaaaccggtggccgagtgatgcggac 40900743  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 6706169 - 6706334
Alignment:
Q  185 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgc-aaaaacgcagtaaactaaca 282  Q
    |||||||||||||||||||||||||| ||| ||||| |||| |||| | ||||| | || ||||||||||||||| | | |||||||||| |||||||||    
T  6706169 aactacgttgagaaccaccacaaaaagctagcagcatcaccgccacaaaacccctccgaaaaccatcacaaaccatcacaaaaaacgcagcaaactaaca 6706268  T
Q  283 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 348  Q
     |||||||||  |   ||||||| ||||| |  ||||||||||| |||||| |||| |||||||||    
T  6706269 ccaccatgaacacgggcgatggagaaaacaattgctgagagaaaccggtggccgagtgatgcggac 6706334  T

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Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 82 - 204
Target Start/End: Complemental strand, 21590407 - 21590285
Alignment:
Q  82 ggttgtatgaattaacctccccttgaaatatttccaaattgatggctagcgtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc 181  Q
    ||||||||||||||||| ||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21590407 ggttgtatgaattaaccgccccttgcaatacttcctaattgatggctagagtttttaatggcagtaacaacagtggttcatgatagaattggaacccacc 21590308  T
Q  182 atgaactacgttgagaaccacca 204  Q
    |||||||| |  |||||||||||    
T  21590307 atgaactatgccgagaaccacca 21590285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 21590285 - 21590207
Alignment:
Q  244 aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgaga 322  Q
    |||||||||||| |||| ||||||||||| ||||||||| ||||||||| || || |||||| ||||| ||||||||||    
T  21590285 aaccatcacaaatcaccacaaaaacgcagcaaactaacaccaccatgaacgctaaagatggagaaaacaaccgctgaga 21590207  T

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Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 40681561 - 40681726
Alignment:
Q  185 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccacaga-ccccacagagaaccatcacaaaccaccgcaaaaa-cgcagtaaactaaca 282  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| | | |||| | || ||||||||||||||||| |||||| ||||| |||||||||    
T  40681561 aactacgttgagaaccaccacaaaaaactagcagcaccaccaccataaaacccctccgaaaaccatcacaaaccaccacaaaaaacgcagcaaactaaca 40681660  T
Q  283 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 348  Q
     ||||||||| || | ||||||| ||||| |||||||||||||| |||||| |||| |||||||||    
T  40681661 ccaccatgaacgcgagcgatggataaaacaaccgctgagagaaaccggtggccgagtgatgcggac 40681726  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 40681095 - 40681124
Alignment:
Q  21 acatcatcaccacaaacaaaactcatcgcc 50  Q
    ||||||||||||||||||||||||||||||    
T  40681095 acatcatcaccacaaacaaaactcatcgcc 40681124  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 185 - 348
Target Start/End: Original strand, 15496561 - 15496726
Alignment:
Q  185 aactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccacc-gcaaaaacgcagtaaactaaca 282  Q
    |||||||||||||||||||||||||||||| ||| | ||||||||| | | ||| | || |||||||||||||||||   ||||||| || |||||||||    
T  15496561 aactacgttgagaaccaccacaaaaaactagcagtaccaccaccacaaaatccctccgaaaaccatcacaaaccaccaaaaaaaacgtagcaaactaaca 15496660  T
Q  283 tcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 348  Q
     ||||||||| || | ||||||| ||||| ||| |||||||||| | |||| |||| |||||||||    
T  15496661 ccaccatgaacgcgagcgatggagaaaacaaccactgagagaaaccagtggccgagtgatgcggac 15496726  T

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Target: scaffold0092 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 174 - 348
Target Start/End: Original strand, 23581 - 23752
Alignment:
Q  174 aacccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccac-agaccccacagagaaccatcacaaaccaccgcaaaaacgcag 272  Q
    |||||||||||||||| |  ||||| ||||||||||||||| ||||| ||||||||| | ||||| | || ||| ||||||||||||| |||||||||      
T  23581 aacccaccatgaactatgccgagaagcaccacaaaaaactagcagcaccaccaccacaaaacccctccgaaaacaatcacaaaccaccacaaaaacgc-- 23678  T
Q  273 taaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatgcggac 348  Q
      |||||| | ||| ||||| ||||| |||||| ||||| ||| |||||||||| |||||| ||||  ||||||||    
T  23679 --aactaaaaccacaatgaacgccaatgatggagaaaacaaccactgagagaaaccggtggccgagtaatgcggac 23752  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 347
Target Start/End: Original strand, 2239220 - 2239323
Alignment:
Q  244 aaccatcacaaaccaccgcaaaaacgcagtaaactaacatcaccatgaatgccaacgatggaaaaaactaccgctgagagaaatcggtggtcgagagatg 343  Q
    ||||||||||||||||| ||||||  ||| ||||||||| ||||||||| |  || ||| || ||||| |||||||||||||| || ||| |||| ||||    
T  2239220 aaccatcacaaaccaccacaaaaatacagcaaactaacaccaccatgaacgttaatgattgataaaacaaccgctgagagaaaccgatggccgagtgatg 2239319  T
Q  344 cgga 347  Q
    ||||    
T  2239320 cgga 2239323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 22335313 - 22335259
Alignment:
Q  177 ccaccatgaactacgttgagaaccaccacaaaaaactaacagcagcaccaccaca 231  Q
    ||||||||||||||    |||||||||||||||||||| || |||||||||||||    
T  22335313 ccaccatgaactaccccaagaaccaccacaaaaaactagcaccagcaccaccaca 22335259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 42677503 - 42677455
Alignment:
Q  85 tgtatgaattaacctccccttgaaatatttccaaattgatggctagcgt 133  Q
    |||||||||||||||||||||  |||||||   ||||||||||||||||    
T  42677503 tgtatgaattaacctccccttacaatatttttcaattgatggctagcgt 42677455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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