View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_12 (Length: 336)
Name: NF0678_high_12
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 43115900 - 43116207
Alignment:
| Q |
1 |
ccctttattgcagcattacaagcaccaacctgcgctttcttctattcatgccacaacaaaatactccatttactattgtaccacataacaattataaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43115900 |
ccctttattgcagcattacaagcaccaacctgcgctttcttctattcatgccacaacaaaatactccatttactattgtaccacataacaattataaata |
43115999 |
T |
|
| Q |
101 |
gagaaaaagggtttctaatgaaatattttatggttattaagtgaactcatataacaatatcttgagttttcattagacttcagtgtaaaattacttgtat |
200 |
Q |
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| T |
43116000 |
gataaaaagggtttctaatgaaatattttatggttattaagtgaactcatataacaatatcttgagttttcattagacttcagtgtaaaattacttgtat |
43116099 |
T |
|
| Q |
201 |
caacagaaaattatttgtatcaacagcacatcttcattaagttcttaataataaaaataaatggattttacatcgatcttacctcttggatatgtacata |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43116100 |
caacagcaaattatttgtatcaacagcacatcttcattaagttcttaataataaaaataaatggattttacatcgatcttacctcttggatatgtacata |
43116199 |
T |
|
| Q |
301 |
ttcttgga |
308 |
Q |
| |
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|| ||||| |
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| T |
43116200 |
tttttgga |
43116207 |
T |
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