View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_15 (Length: 312)
Name: NF0678_high_15
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_15 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0703 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 80 - 312
Target Start/End: Original strand, 42578947 - 42579179
Alignment:
| Q |
80 |
gatggacatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggat |
179 |
Q |
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| T |
42578947 |
gatgcacatcatcatccaatttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccaacttacgctatcgaagactttggat |
42579046 |
T |
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| Q |
180 |
atatcaagtttcaaggcaatctcacctttgttcccttagttttgcagcacatgatgtgaaggatttcaaatgccgtaagagcattgttcatgatggattt |
279 |
Q |
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| T |
42579047 |
atatcaagtttcaaggcaatctcacctttgttcccttagttttgcagcgcatggtgtgaaggatttcaaatgccgttagagcattgtccatgatggatct |
42579146 |
T |
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| Q |
280 |
tgagtggacaaatgttgcctgctctagagatat |
312 |
Q |
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| T |
42579147 |
tgagtggaaaaaggctgcctgctctggagatat |
42579179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0703 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0703
Description:
Target: scaffold0703; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 1863 - 1986
Alignment:
| Q |
85 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
184 |
Q |
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| T |
1863 |
acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc |
1962 |
T |
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| Q |
185 |
aagtttcaaggcaatctcaccttt |
208 |
Q |
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| T |
1963 |
aagtttcaaagcaacctcaccttt |
1986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 208
Target Start/End: Original strand, 12460971 - 12461094
Alignment:
| Q |
85 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
184 |
Q |
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| T |
12460971 |
acatcatcatccaagttacccattgagaacaaaaacccaacttttcaagaataacttgaagataagaccagctgacactgtcaaatgctttggatatatc |
12461070 |
T |
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| Q |
185 |
aagtttcaaggcaatctcaccttt |
208 |
Q |
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| T |
12461071 |
aagtttcaaagcaacctcaccttt |
12461094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 13190525 - 13190615
Alignment:
| Q |
102 |
acccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatcaagtttca |
192 |
Q |
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| T |
13190525 |
acccattgtgaacaaaatcccatcttagtaagaatagcttcgaggtatgaccagcttatgctatcaaaagcttttgatatatcaagtttca |
13190615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 16861133 - 16861010
Alignment:
| Q |
85 |
acatcatcatccagtttacccatttagaacaaaatcccatcttgaaaagaattgcttgtaagtaagaccagcttacgctatcgaaggctttggatatatc |
184 |
Q |
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| T |
16861133 |
acatcatcatccaagttatccattgagaacaaaaacccaacttttcaagaatagcttgaagataagaccagctgacactgtcaaatgctttggatatgtc |
16861034 |
T |
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| Q |
185 |
aagtttcaaggcaatctcaccttt |
208 |
Q |
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| T |
16861033 |
aagtttcaaagcaacctcaccttt |
16861010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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