View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_20 (Length: 277)
Name: NF0678_high_20
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 49 - 186
Target Start/End: Original strand, 43227252 - 43227389
Alignment:
| Q |
49 |
ttgtggtggtcgtattagaaatcatcgcgtcatttcattgaaggtttccgttgcaatattgaaacctcttatgttgttcatgctgtgttgtgggatcttt |
148 |
Q |
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| T |
43227252 |
ttgtggtggtcgtattagagatcatcgcgtcatttcattgaaggtttccattgcaatattgaaacctcttatgttgttcatggtgtgttgtgggatcttt |
43227351 |
T |
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| Q |
149 |
atcacgacttaaagtttgctcgtgagctccatatttcc |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43227352 |
atcacgacttaaagtttgctcgtgagctccatatttcc |
43227389 |
T |
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