View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_26 (Length: 261)
Name: NF0678_high_26
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_26 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 35176762 - 35176988
Alignment:
| Q |
35 |
gacacacatgtattgtgaggtactgataactgtgcaccaaacacccttaaaatatgcatatcactggttgtaatgatcattccacttcctttaccaagca |
134 |
Q |
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| T |
35176762 |
gacacacatgtatcgtgagatactgataactgagctccaaacactcttagaatatgcatatccctggttgtaatgatcattctacttcctttaccaagca |
35176861 |
T |
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| Q |
135 |
attcaggatttatagccaattcttccatttgctctaatagatcagcattgtcaaggactacaagaaactttttgttgcaaagtcttttacgtacaattcc |
234 |
Q |
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| T |
35176862 |
attcaggatttatagccaattcttccatttgttctaatagatcagcattgtcaagaactacaagaaactttttgttgcaaagtcttttacgtacaattcc |
35176961 |
T |
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| Q |
235 |
agatatttcagaagggctgtatgtctc |
261 |
Q |
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| T |
35176962 |
agatatttcagaagggctgtatgtctc |
35176988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 35182721 - 35182945
Alignment:
| Q |
35 |
gacacacatgtattgtgaggtactgataactgtgcaccaaacacccttaaaatatgcatatcactggttgtaatgatcattccacttcctttaccaagca |
134 |
Q |
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||||||||||||| ||||| |||||||||||| || |||||||| | | |||||||||||| |||||||||||||| |||| ||||||||||||||||| |
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| T |
35182721 |
gacacacatgtatcgtgagatactgataactgagctccaaacactc--agaatatgcatatccctggttgtaatgattattctacttcctttaccaagca |
35182818 |
T |
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| Q |
135 |
attcaggatttatagccaattcttccatttgctctaatagatcagcattgtcaaggactacaagaaactttttgttgcaaagtcttttacgtacaattcc |
234 |
Q |
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| T |
35182819 |
attcaggatttatagccaattcttccatttgctctaatagatcagcattgtcaaggactacaagaaactttttgttgcaaagtcttttacgtataattcc |
35182918 |
T |
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| Q |
235 |
agatatttcagaagggctgtatgtctc |
261 |
Q |
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| T |
35182919 |
agatatttcagaagggctgtatgtctc |
35182945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 30 - 261
Target Start/End: Original strand, 35053880 - 35054111
Alignment:
| Q |
30 |
catatgacacacatgtattgtgaggtactgataactgtgcaccaaacacccttaaaatatgcatatcactggttgtaatgatcattccacttcctttacc |
129 |
Q |
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||||||| || |||||| ||||| || |||||||||| | ||| | || |||| ||||||||||| || |||||||||||||| | |||||||||||| |
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| T |
35053880 |
catatgatacgcatgtaccgtgagataatgataactgttctccatagactcttagaatatgcatattcctagttgtaatgatcatcctacttcctttacc |
35053979 |
T |
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| Q |
130 |
aagcaattcaggatttatagccaattcttccatttgctctaatagatcagcattgtcaaggactacaagaaactttttgttgcaaagtcttttacgtaca |
229 |
Q |
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|| |||||||||||||||||| |||||||||| |||||||| || |||| |||||||||| ||||||||||||||| ||||||| ||||||||||||||| |
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| T |
35053980 |
aaccaattcaggatttatagctaattcttccacttgctctagtaaatcaacattgtcaagaactacaagaaactttctgttgcacagtcttttacgtaca |
35054079 |
T |
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| Q |
230 |
attccagatatttcagaagggctgtatgtctc |
261 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
35054080 |
attccagatatttcagaagggctgtatgtctc |
35054111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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