View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_high_31 (Length: 229)

Name: NF0678_high_31
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_high_31
NF0678_high_31
[»] chr6 (3 HSPs)
chr6 (7-226)||(19649729-19649944)
chr6 (146-226)||(19658877-19658957)
chr6 (152-200)||(9987351-9987399)
[»] chr7 (4 HSPs)
chr7 (150-224)||(21145908-21145982)
chr7 (155-218)||(29190827-29190890)
chr7 (146-226)||(7467335-7467415)
chr7 (179-226)||(29190296-29190343)
[»] chr5 (1 HSPs)
chr5 (146-226)||(15209467-15209547)
[»] chr2 (2 HSPs)
chr2 (146-226)||(44255282-44255362)
chr2 (146-191)||(20116503-20116548)
[»] chr3 (2 HSPs)
chr3 (146-212)||(8634991-8635058)
chr3 (144-176)||(5685682-5685714)
[»] chr4 (1 HSPs)
chr4 (146-219)||(8025918-8025991)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 19649729 - 19649944
Alignment:
Q  7 tgtttatggttggacccaatgacaactatacgacattttttattggttctcttattactggtaaagaacaacaataatgggtccttatgtctttcttgct 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  19649729 tgtttatagttggacccaatgacaactatacgacattttttattggttctcttattactagtaaagaacaacaataatgtgtccttatgtctttcttgct 19649828  T
Q  107 ttaagacacttctatttgtcaccatttaccttactgtaccactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaa 206  Q
    | ||||||||||||    |||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |||| |||    
T  19649829 tgaagacacttcta----tcaccatttaccttaccgtaccactacaagaaaatctaagatttgctactatgactgtgctaggaaatttaattgtagagaa 19649924  T
Q  207 tatcaacataattagctacc 226  Q
    ||||||||||||||||||||    
T  19649925 tatcaacataattagctacc 19649944  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 146 - 226
Target Start/End: Complemental strand, 19658957 - 19658877
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 226  Q
    |||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19658957 cactacaaaaaaatctaagttttgctaccatgagtgtgctaggaaatttaatggtagcgaatatcaacataattagctacc 19658877  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 9987351 - 9987399
Alignment:
Q  152 aagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggt 200  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||||||    
T  9987351 aagaaaatctaagatttgctatcataagtgtgctaggaaatttaatggt 9987399  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 150 - 224
Target Start/End: Complemental strand, 21145982 - 21145908
Alignment:
Q  150 acaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagcta 224  Q
    |||| ||||| |||||||| |||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  21145982 acaaaaaaatttaagattttctaccatgagtgtgctagaaaatttaatgggagtgaatatcaacataattagcta 21145908  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 29190890 - 29190827
Alignment:
Q  155 aaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataat 218  Q
    |||||||||||||| ||||||||| |||| |||||||||||||| ||| |||||||||||||||    
T  29190890 aaaatctaagatttgctaccatgaatgtggtaggaaatttaatgatagtgaatatcaacataat 29190827  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 7467335 - 7467415
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 226  Q
    |||||||||||||| | |||||| ||||||||| ||||||||||||| |||||||||  |||||||  ||||||| |||||    
T  7467335 cactacaagaaaatatcagatttgctaccatgattgtgctaggaaatgtaatggtagtaaatatcattataattaactacc 7467415  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 226
Target Start/End: Original strand, 29190296 - 29190343
Alignment:
Q  179 gtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 226  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||    
T  29190296 gtgtgctaggaaatttaatggtagtgaatatcaacataattaactacc 29190343  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 15209467 - 15209547
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 226  Q
    |||||||||| |||||||||||| ||||||| | ||||||||||||| || |||||| |||||| || | |||||||||||    
T  15209467 cactacaagagaatctaagatttgctaccataactgtgctaggaaatatattggtagtgaatattaaaacaattagctacc 15209547  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 44255282 - 44255362
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataattagctacc 226  Q
    ||||||||||||||||||||||| ||||||| | |||||||  ||||  ||||||||  |||||||| ||||||| |||||    
T  44255282 cactacaagaaaatctaagatttgctaccataactgtgctacaaaataaaatggtagtaaatatcaaaataattaactacc 44255362  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 191
Target Start/End: Complemental strand, 20116548 - 20116503
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaa 191  Q
    |||||||||||||| ||||||||  |||||||| ||||||||||||    
T  20116548 cactacaagaaaatataagatttggtaccatgattgtgctaggaaa 20116503  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 8634991 - 8635058
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgc-taggaaatttaatggtagggaatatcaa 212  Q
    ||||||| ||||||||||||||| ||| ||||| |||||  ||||||| ||||||||| |||||||||    
T  8634991 cactacaggaaaatctaagatttgctatcatgactgtgcaaaggaaatgtaatggtagtgaatatcaa 8635058  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 5685682 - 5685714
Alignment:
Q  144 accactacaagaaaatctaagatttactaccat 176  Q
    ||||||||||||||||||||||||| |||||||    
T  5685682 accactacaagaaaatctaagattttctaccat 5685714  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Complemental strand, 8025991 - 8025918
Alignment:
Q  146 cactacaagaaaatctaagatttactaccatgagtgtgctaggaaatttaatggtagggaatatcaacataatt 219  Q
    |||||||||||||||| |||||| ||||||| | |||||||  |||| |||||||||  ||||| || ||||||    
T  8025991 cactacaagaaaatcttagatttgctaccataattgtgctacaaaatgtaatggtagtaaatatgaatataatt 8025918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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