View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_6 (Length: 451)
Name: NF0678_high_6
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 30 - 327
Target Start/End: Complemental strand, 34893535 - 34893237
Alignment:
| Q |
30 |
aataatagtttacaaatcaaattatttgatcatctcagttggccaaccatgcaagtcgctaacacattgatatttttagcgcttggcttcaatatacgtg |
129 |
Q |
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| T |
34893535 |
aataatagtttacaaatcaaattatttgatcatcttagttggccaaccatacaagtcgctaacacattgatatttctagcgcttggcttcaatatatgtg |
34893436 |
T |
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| Q |
130 |
gagcgccnnnnnnnttcaatgtcttagcaagtgtcatcaaagacaggacgagtacgggtcgagatcgagtgattttaagagggaaaaattatcatgactc |
229 |
Q |
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| T |
34893435 |
gagcgccaaaaatat-caatgtcttagcaagtgtcatcaaagacgggacgagaacggatcgagatcgagtgattttaagagggaaaaattatcataactc |
34893337 |
T |
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| Q |
230 |
tatttgtacct--ctcttattttaataattatttgtctttcaaatttctcttgtgaaaaaacacattaaaatacacaaagtcaccatgtatttatttcat |
327 |
Q |
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| T |
34893336 |
tatttgtacctccctcttattttaataactatttgtctttcatatttctcttgtgaaaaaacacattaaaatacacaaagtcaccatgcatttatttcat |
34893237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 407
Target Start/End: Complemental strand, 40681719 - 40681641
Alignment:
| Q |
329 |
tcactcgaccaccgatttctctcagcggtagttttttccatcgttggcattcacggtgatgttagtttactgcgttttt |
407 |
Q |
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| T |
40681719 |
tcactcggccaccggtttctctcagcggttgttttatccatcgctcgcgttcatggtggtgttagtttgctgcgttttt |
40681641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 329 - 416
Target Start/End: Complemental strand, 40900736 - 40900649
Alignment:
| Q |
329 |
tcactcgaccaccgatttctctcagcggtagttttttccatcgttggcattcacggtgatgttagtttactgcgtttttgcggtggtt |
416 |
Q |
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| T |
40900736 |
tcactcggccaccggtttctctcagcggttgttttctccatcgttgacattcatggtgatgttagtttgctgtgtttttgtggtggtt |
40900649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 425
Target Start/End: Original strand, 21590207 - 21590285
Alignment:
| Q |
348 |
tctcagcggtagttttttccatcgttggcattcacggtgatgttagtttactgcgtttttgcggtg-gttgtgatggtt |
425 |
Q |
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|||||||||| ||||| |||||| || || |||| |||| ||||||||| ||||||||||| |||| ||||||||||| |
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| T |
21590207 |
tctcagcggttgttttctccatctttagcgttcatggtggtgttagtttgctgcgtttttgtggtgatttgtgatggtt |
21590285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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