View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_high_7 (Length: 401)
Name: NF0678_high_7
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 82 - 401
Target Start/End: Original strand, 4788833 - 4789151
Alignment:
| Q |
82 |
aactgcttttaactgtcatggtgactgaggttcacagtaattagtttgctataaccgttggagctagatagcttgagctagaagcaatcnnnnnnnnnnn |
181 |
Q |
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| T |
4788833 |
aactgcttttaactgtcatggtgactgaggttcacagtaattagtttgctataaccgttggagctagatagcttgagctagaagcaatcatatatataaa |
4788932 |
T |
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| Q |
182 |
nnnnnnatgcattcctttggttgttaaattgctagaatgaaatcagtttcaagtctaacaaacacatagagtaaaaagagtgacaaaacaagagtgaatt |
281 |
Q |
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| T |
4788933 |
tatataatgcattcctttggttgttaaattgctagaatgaaatcagtttcaagtctaacaaacacatagagtaaaa-gagtgacaaaacaagagtgaatt |
4789031 |
T |
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| Q |
282 |
atggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattgtaaacgttgattcatagtggagtttttgctcggattttaattgagga |
381 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | | || ||||| |
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| T |
4789032 |
ctggcgagtttgttgcgagaatgagtcttaagctttgtgatttcacaccattgtaaacgttgattcatagtggagtttttgctcggactctgatcgagga |
4789131 |
T |
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| Q |
382 |
aaaacatttagtaagaaact |
401 |
Q |
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| T |
4789132 |
aaaacatttagtaagaaact |
4789151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 370
Target Start/End: Original strand, 20724414 - 20724527
Alignment:
| Q |
256 |
aaagagtgacaaaacaagagtgaattatggcgagtttgttgcgagaatgagtcttaagctttgttattttacaccattgtaaacgttgattcatagtgga |
355 |
Q |
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| T |
20724414 |
aaagagtga-aaaacaggagtgaaatctagtgagtttggtgagataatgagtctcaagtcttgtgatttcacaccagtgtaagcattgattcgtagtgga |
20724512 |
T |
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| Q |
356 |
gtttttgctcggatt |
370 |
Q |
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| T |
20724513 |
gtttttgctcggatt |
20724527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 165
Target Start/End: Original strand, 20724308 - 20724342
Alignment:
| Q |
131 |
tataaccgttggagctagatagcttgagctagaag |
165 |
Q |
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| T |
20724308 |
tataaccgttggaactagatagcttgagctagaag |
20724342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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