View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_high_8 (Length: 388)

Name: NF0678_high_8
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_high_8
NF0678_high_8
[»] chr2 (5 HSPs)
chr2 (72-362)||(29746762-29747051)
chr2 (171-243)||(17862954-17863025)
chr2 (16-49)||(29747073-29747106)
chr2 (160-222)||(16879305-16879366)
chr2 (160-222)||(16991438-16991499)
[»] chr6 (3 HSPs)
chr6 (171-237)||(10863362-10863427)
chr6 (159-243)||(15594568-15594651)
chr6 (196-243)||(6634272-6634320)
[»] chr5 (3 HSPs)
chr5 (161-243)||(21098675-21098754)
chr5 (161-243)||(28739284-28739362)
chr5 (203-243)||(17304518-17304558)
[»] chr1 (2 HSPs)
chr1 (171-246)||(1945056-1945131)
chr1 (160-193)||(10216801-10216834)
[»] chr4 (3 HSPs)
chr4 (161-243)||(11042502-11042583)
chr4 (160-246)||(24854257-24854342)
chr4 (160-192)||(28085844-28085876)
[»] chr8 (1 HSPs)
chr8 (160-193)||(24716113-24716146)
[»] chr3 (1 HSPs)
chr3 (159-243)||(8677853-8677936)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 72 - 362
Target Start/End: Complemental strand, 29747051 - 29746762
Alignment:
Q  72 catgatttgtaccagatgtatatttttcagatgatgtattttattggatgtacgaaacttgtattataaatgtatttatttggacaagtttatgttgtaa 171  Q
    |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  29747051 catgatttgtactagatgtatatttttcagatgctgtatgttattggatgtacgaa-cttgtattagaaatgtatttatttggacaagtttatgttgtaa 29746953  T
Q  172 attttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttacaaatgacatgtagatttttatgagtgata 271  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  29746952 attttaatgtatccagtactaatgtttaatacacatactaaatattctagacaatttagtatgggtgttacaaatgacatgtatatttttatgagtgata 29746853  T
Q  272 tttctaggatgtgtttcaattagttagttttggtggcttttttgctctgtggtaagatttgttaagtttcaaattagcctttgatgctttt 362  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  29746852 tttataggatgtgtttctattagttagttttggtggcttttttgctctgtggtaagactttttaagtttcaaattagcctttgatgctttt 29746762  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 17863025 - 17862954
Alignment:
Q  171 aattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 243  Q
    |||||||||||||  |||| ||| ||||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  17863025 aattttaatgtatccagtagtaa-gtttaatacgcatgctaaatattctagacaatttagtatgggtgttaca 17862954  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 29747106 - 29747073
Alignment:
Q  16 aggttcatgccagatatcaacagaaggaagccgg 49  Q
    ||||||||||||||||||||||||||||||||||    
T  29747106 aggttcatgccagatatcaacagaaggaagccgg 29747073  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 16879305 - 16879366
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga 222  Q
    |||||||||||||||||||||||| ||||||||| |  |||| |||||||||||  |||||||    
T  16879305 tttatgttgtaaattttaatgtatctagtactaaag-ataatgcacatactaaactttctaga 16879366  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 16991438 - 16991499
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga 222  Q
    |||||||||||||||||||||||| ||||||||| |  |||| |||||||||||  |||||||    
T  16991438 tttatgttgtaaattttaatgtatctagtactaaag-ataatgcacatactaaactttctaga 16991499  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 10863362 - 10863427
Alignment:
Q  171 aattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagt 237  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||    
T  10863362 aattttaatgtattcagtactaa-gtttaatacgcatactaaatattctagacagtttagtatgagt 10863427  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 243
Target Start/End: Original strand, 15594568 - 15594651
Alignment:
Q  159 gtttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagaca-atttagtatgagtgttaca 243  Q
    |||||||||||||||||||||||||  ||||||||    ||| |||||| |||| ||||||||| | |||||||||| ||||||||    
T  15594568 gtttatgttgtaaattttaatgtatccagtactaa--aataacacacatgctaactattctagatacatttagtatgggtgttaca 15594651  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 6634320 - 6634272
Alignment:
Q  196 tttaatacacatactaaatattctagaca-atttagtatgagtgttaca 243  Q
    |||||| ||||| |||||||||||||||| |||||||||| ||||||||    
T  6634320 tttaatccacatgctaaatattctagacacatttagtatgggtgttaca 6634272  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 21098754 - 21098675
Alignment:
Q  161 ttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 243  Q
    ||||||||||| |||||||||||| ||||||||   |||| |  ||| |||||||||||||||||||||||||| ||||||||    
T  21098754 ttatgttgtaa-ttttaatgtattcagtactaag--ttaacatgcatgctaaatattctagacaatttagtatgggtgttaca 21098675  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 28739362 - 28739284
Alignment:
Q  161 ttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 243  Q
    ||||||||||| |||||||||||  ||||||||   ||||  ||||| ||||| |||||||||||||||||||||||||||||    
T  28739362 ttatgttgtaa-ttttaatgtatccagtactaag--ttaacgcacatgctaaa-attctagacaatttagtatgagtgttaca 28739284  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 17304518 - 17304558
Alignment:
Q  203 cacatactaaatattctagacaatttagtatgagtgttaca 243  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  17304518 cacattctaaatattctagacagtttagtatgtgtgttaca 17304558  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 1945056 - 1945131
Alignment:
Q  171 aattttaatgtatttagtacta-atgtttaatacacatactaaatattctagacaatttagtatgagtgttacaaat 246  Q
    ||||||||||||| |||||||  |||||||| || |||  |||||||| |||||||||||||||| |||||||||||    
T  1945056 aattttaatgtatctagtactttatgtttaacacccatt-taaatattatagacaatttagtatgggtgttacaaat 1945131  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 10216801 - 10216834
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtactaa 193  Q
    ||||||||||||||||||||||||| ||||||||    
T  10216801 tttatgttgtaaattttaatgtattcagtactaa 10216834  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 11042502 - 11042583
Alignment:
Q  161 ttatgttgtaaattttaatgtatttagtacta-atgtttaatacacatactaaatattctagacaatttagtatgagtgttaca 243  Q
    ||||||||||| |||||||| || || ||||  ||||||||||| | | |||||||||||| ||||||||||||||||||||||    
T  11042502 ttatgttgtaa-ttttaatgcatctaatactttatgtttaatactcgt-ctaaatattctaaacaatttagtatgagtgttaca 11042583  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 24854342 - 24854257
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctagaca-atttagtatgagtgttacaaat 246  Q
    ||||||||||||||| ||||||||  ||||||||   ||||  ||||| |||||||||||| |||  ||||||||| |||||||||||    
T  24854342 tttatgttgtaaattataatgtatccagtactaa--gttaacccacatgctaaatattctaaacacgtttagtatgggtgttacaaat 24854257  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 28085876 - 28085844
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtacta 192  Q
    ||||||||||||||||||||||||| |||||||    
T  28085876 tttatgttgtaaattttaatgtattcagtacta 28085844  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 24716113 - 24716146
Alignment:
Q  160 tttatgttgtaaattttaatgtatttagtactaa 193  Q
    |||||||||||||||||||||||| |||||||||    
T  24716113 tttatgttgtaaattttaatgtatctagtactaa 24716146  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 8677936 - 8677853
Alignment:
Q  159 gtttatgttgtaaattttaatgtatttagtactaatgtttaatacacatactaaatattctaga-caatttagtatgagtgttaca 243  Q
    ||||||||||||| |||||||||||  |||||||| ||||||  ||||| ||||||||||||||  ||||||||||| || |||||    
T  8677936 gtttatgttgtaa-ttttaatgtatcaagtactaa-gtttaacgcacatgctaaatattctagataaatttagtatgggttttaca 8677853  T

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