View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_1 (Length: 646)
Name: NF0678_low_1
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-160; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 340 - 630
Target Start/End: Complemental strand, 49485573 - 49485283
Alignment:
| Q |
340 |
actaaggagtaataatgtttgaattgatagcagggaaaattccctcagatgcttctgacataaacattctcagcatgattaaaactaatgattttcttat |
439 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485573 |
actaaggagtaataatgtttgaattgatagcagggcaaattccctcagatgcttctgacataaacattctcagcatgattaaaactaatgattttcttat |
49485474 |
T |
|
| Q |
440 |
cactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaagctcctct |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49485473 |
cactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaagctcctct |
49485374 |
T |
|
| Q |
540 |
caagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatca |
630 |
Q |
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| T |
49485373 |
caagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttctatca |
49485283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 29 - 333
Target Start/End: Complemental strand, 49486277 - 49485973
Alignment:
| Q |
29 |
accatctacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtataaggaaacatttgaagagtacatcaaatcaacgg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49486277 |
accatctacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtacaaggaaacatttgaagagtacatcaaatcaacgg |
49486178 |
T |
|
| Q |
129 |
tgagtaacacaacgcatttaaacatttggctatcataatcttgcatactgcattactgctaaatgtgaagaagaaagagttatttgtttaataggaattt |
228 |
Q |
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| T |
49486177 |
tgagtaacacaacgcatttaaacatttggctatcataatcttgcatactgcattactgctaaacgtgaagaagaaagagttatttgtttaataggaattt |
49486078 |
T |
|
| Q |
229 |
cttgtacaattttagaaactaaggattgaatggaaagggatagagtaaattggatataggagcaaatttgtagaagcaaaatatttttcttttccttctt |
328 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49486077 |
cttgtacagttttagaaacaaaggattgaatggaaagggatagagtaaattggacataggagcaaatttgtagaagcaaaatatttttctttttcttctt |
49485978 |
T |
|
| Q |
329 |
tcttg |
333 |
Q |
| |
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||||| |
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| T |
49485977 |
tcttg |
49485973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 428 - 628
Target Start/End: Complemental strand, 49701992 - 49701795
Alignment:
| Q |
428 |
tgattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatga |
527 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| |||||||||| || |||||||||||||||||||||||||| |
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| T |
49701992 |
tgattttcttatcattaggttctgccatctttgagagaaaagaaagatgaacttttgttgagagaactacttgaaagatggtcaaatcacaaaattatga |
49701893 |
T |
|
| Q |
528 |
ccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttcta |
627 |
Q |
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||||||||||||||||||||||| |||||||| ||| || |||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49701892 |
ccaagctcctctcaagaatttttcgttatcttcataaataccatatcc---gtaaaaggggactttcttctcttgaagaaactggcttcttatccttcta |
49701796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 49703234 - 49703137
Alignment:
| Q |
40 |
tatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtataaggaaacatttgaagagtacatcaaatcaacggtgagtaaca |
137 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
49703234 |
tatgtgtactcaaaagcctcctcatgaatattccgaacaattgtatgaaaagtacaaggaaacatttgacgggtacatcaaatcaactgtgagtaaca |
49703137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 428 - 628
Target Start/End: Complemental strand, 49532185 - 49531988
Alignment:
| Q |
428 |
tgattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatga |
527 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||| ||| |||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
49532185 |
tgattttcttatcactaggttctgccatcgttgagaggaaagaaagatgaacttttgttgagagaactgctcggaagatggtcaattcacaaaactatga |
49532086 |
T |
|
| Q |
528 |
ccaagctcctctcaagaattttttgttatcttgatagattccatatcccaagaaaatggggacttccttctcttgaagaaactggcttcttatccttcta |
627 |
Q |
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||||| ||||| | ||||| |||||||||||||| | ||| | ||| | | ||||||||||||||||||||| |||||| || |||||||| |
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| T |
49532085 |
ccaagtgtctctctaagttttttcattatcttgatagatactttat---aggaagacagcgacttccttctcttgaagaaattggcttgttgtccttcta |
49531989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 413 - 530
Target Start/End: Complemental strand, 49521206 - 49521087
Alignment:
| Q |
413 |
catgattaaaactaat--gattttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtc |
510 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||| ||||| ||||||| ||| ||||||||||| ||| ||||||||||| || ||||||||| |
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| T |
49521206 |
catgattaaaactaatatgattttctaatcactaggttctgccatcattgagaggaaagaaagatgaacttttgttgagagaactggtccaaagatggtc |
49521107 |
T |
|
| Q |
511 |
aaatcacaaaattatgacca |
530 |
Q |
| |
|
|||||| |||| |||||||| |
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| T |
49521106 |
aaatcagaaaactatgacca |
49521087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 432 - 561
Target Start/End: Original strand, 55070939 - 55071068
Alignment:
| Q |
432 |
tttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgaccaa |
531 |
Q |
| |
|
|||||||| | |||||||| ||||||||| ||||||| || ||||| || ||| ||||||||||||| | ||||| |||| || ||| | ||||||||| |
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|
| T |
55070939 |
tttcttattaataggttctgccatctttgggagaaaagaaggatgaccttttgttgagagaactgcttagaagatagtcagattacatagttatgaccag |
55071038 |
T |
|
| Q |
532 |
gctcctctcaagaattttttgttatcttga |
561 |
Q |
| |
|
|| |||||||| | ||||||| |||||||| |
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| T |
55071039 |
gcgcctctcaaaagttttttggtatcttga |
55071068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 431 - 543
Target Start/End: Original strand, 55066629 - 55066740
Alignment:
| Q |
431 |
ttttcttatcactaggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaaattatgacca |
530 |
Q |
| |
|
||||||||| | ||||| ||||||||| || |||||| ||||||||| ||| ||||||||||| ||| ||||||||||||| ||||||||| ||||| |
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| T |
55066629 |
ttttcttattaataggt-cttccatctctgcaagaaaagcaagatgaacctttgttgagagaactgttcagaagatggtcaaattacaaaattacgacca |
55066727 |
T |
|
| Q |
531 |
agctcctctcaag |
543 |
Q |
| |
|
| | ||||||||| |
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| T |
55066728 |
aacgcctctcaag |
55066740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 49532597 - 49532514
Alignment:
| Q |
35 |
tacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtataaggaaacatttgaagagtacatc |
118 |
Q |
| |
|
|||| |||||| ||||||| ||| |||||||| ||||| | | | |||||||||||||||||||||||||| |||| |||||| |
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|
| T |
49532597 |
tacaatatgtgtactcaaaagccgcctcatgactattctcagccactgtatgaaaagtataaggaaacatttcaagattacatc |
49532514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 50239961 - 50240012
Alignment:
| Q |
75 |
aacaattgtatgaaaagtataaggaaacatttgaagagtacatcaaatcaac |
126 |
Q |
| |
|
||||||||||||| ||||| |||||| ||||| ||||||||||||||||||| |
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|
| T |
50239961 |
aacaattgtatgacaagtacaaggaagcatttcaagagtacatcaaatcaac |
50240012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 50240273 - 50240198
Alignment:
| Q |
445 |
ggttcttccatctttgagagaaaataaagatgaactcttgctgagagaactgctcataagatggtcaaatcacaaa |
520 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||||||||||||| | |||||| |||||| ||||||| ||||||||||| |
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|
| T |
50240273 |
ggttctgccatctttacgaggaaagaaagatgaactcttgttaagagaattgctcagaagatggccaaatcacaaa |
50240198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 49522215 - 49522159
Alignment:
| Q |
81 |
tgtatgaaaagtataaggaaacatttgaagagtacatcaaatcaacggtgagtaaca |
137 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| ||||||||||| |||||||||| |
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|
| T |
49522215 |
tgtatgacaagtataaggaagtgtttgaagagtatatcaaatcaactgtgagtaaca |
49522159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 138
Target Start/End: Complemental strand, 49478659 - 49478556
Alignment:
| Q |
35 |
tacactatgtgcactcaaaggcctcctcatgaatattccgaacaattgtatgaaaagtataaggaaacatttgaagagtacatcaaatcaacggtgagta |
134 |
Q |
| |
|
|||| |||||| ||||||| ||||||| |||| ||||| | | ||||||||| ||||| |||||| | || |||||||||||| |||||||||||| |
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|
| T |
49478659 |
tacaatatgtgtactcaaaagcctcctaatgactattctcagccattgtatgacaagtacaaggaagcgttcgaagagtacatcgtgtcaacggtgagtt |
49478560 |
T |
|
| Q |
135 |
acac |
138 |
Q |
| |
|
|||| |
|
|
| T |
49478559 |
acac |
49478556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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