View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_13 (Length: 402)
Name: NF0678_low_13
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 80 - 374
Target Start/End: Complemental strand, 1833581 - 1833286
Alignment:
| Q |
80 |
ttctatcatggacactaggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttcattatgatgg |
179 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
1833581 |
ttctatcatggacactaggtatgcagagagcacctgggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttgattatgatgg |
1833482 |
T |
|
| Q |
180 |
tgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccacaa |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1833481 |
tgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattggtgaaccacaa |
1833382 |
T |
|
| Q |
280 |
gtatactttcaa-ttttannnnnnnnggtacaaatatactttcaactttttaatacaacaaaaatatcatgttcattcaatttttatttattttat |
374 |
Q |
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|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1833381 |
gtatactttcaattttttttttttgtgttacaaatatactttcaactttttaatacaacaaaaatatcatgctcattcaatttttatttattttat |
1833286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 35523297 - 35523518
Alignment:
| Q |
71 |
ggtagataattctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttc |
169 |
Q |
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|||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||||| |
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| T |
35523297 |
ggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagagccatttc |
35523396 |
T |
|
| Q |
170 |
attatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattgg |
269 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35523397 |
attaagatggtgagttcaaactgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattgg |
35523496 |
T |
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| Q |
270 |
tgaaccacaagtatactttcaa |
291 |
Q |
| |
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||||||||| ||||| |||||| |
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| T |
35523497 |
tgaaccacaggtatattttcaa |
35523518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 71 - 284
Target Start/End: Original strand, 35505901 - 35506115
Alignment:
| Q |
71 |
ggtagataattctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttc |
169 |
Q |
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|||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | |||||||||||||||||||| |||||||||| |
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| T |
35505901 |
ggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagaaccaaagagagccatttc |
35506000 |
T |
|
| Q |
170 |
attatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattgg |
269 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35506001 |
attaagatggtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattgg |
35506100 |
T |
|
| Q |
270 |
tgaaccacaagtata |
284 |
Q |
| |
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||||||||| ||||| |
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| T |
35506101 |
tgaaccacaggtata |
35506115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 71 - 284
Target Start/End: Original strand, 35535719 - 35535933
Alignment:
| Q |
71 |
ggtagataattctatcatggacacta-ggtatgcagagagcagcagggttgtatggttctttgataatagatttaccaaagaaccaaagcgagccatttc |
169 |
Q |
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|||| ||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| | ||| | ||||||||||||| |||||| |||||||||| |
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| T |
35535719 |
ggtacatatttctatcatggacactatggtatgcaaagagcagcagggttgtatggttctctaatagtggatttaccaaagagccaaagagagccatttc |
35535818 |
T |
|
| Q |
170 |
attatgatggtgagttcaacctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttcagccccaatgagatggattgg |
269 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35535819 |
attacgatggtgagttcaatctgctccttagtgatctgtggcacacaagttcacatgaacaagaggttggcctctcttctgccccaatgagatggattgg |
35535918 |
T |
|
| Q |
270 |
tgaaccacaagtata |
284 |
Q |
| |
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||||||||| ||||| |
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| T |
35535919 |
tgaaccacaggtata |
35535933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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