View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_17 (Length: 385)
Name: NF0678_low_17
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_17 |
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| [»] scaffold0209 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 116107 - 115831
Alignment:
| Q |
14 |
atatctattggacctatccaccataacaacgaaagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagacaaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116107 |
atatctattggacctatccaccataacaacgaaagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagacaaga |
116008 |
T |
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| Q |
114 |
aaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagcaatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116007 |
aaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagcaatt |
115908 |
T |
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| Q |
214 |
ggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
290 |
Q |
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| T |
115907 |
ggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
115831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 177680 - 177956
Alignment:
| Q |
14 |
atatctattggacctatccaccataacaacgaaagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagacaaga |
113 |
Q |
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||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| | ||||| |||||||| |||| ||||||||||||| |||| | | |
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| T |
177680 |
atatcaattggacctatccaccataacaacaaaaaacttgaggaaatgcaagagcataaacaaagatattttcattttttttggaatcgcatagaagaaa |
177779 |
T |
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| Q |
114 |
aaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagcaatt |
213 |
Q |
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| T |
177780 |
aaaatgatttaattaactacaaagctttcctagaacaagaagagaaaaatattcgccattgttaccaaaagaagtttcctgatatcagccatgaacaatt |
177879 |
T |
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| Q |
214 |
ggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
290 |
Q |
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| T |
177880 |
tgttgacatgatattgttggatgttgtgttcatcatggagctgtttttaagagaagctaaaaaatgggaacacaaag |
177956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 606370 - 606646
Alignment:
| Q |
14 |
atatctattggacctatccaccataacaacgaaagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagacaaga |
113 |
Q |
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||||| ||||||||||||||||||| |||| ||| || |||||| |||||||| ||||||| |||||||| |||| |||||||||||||||||| | | |
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| T |
606370 |
atatcaattggacctatccaccatagcaacaaaacacatgaggatatgcaagaacacaaacagagatattttcatttcttttggaatcgcctagaccaaa |
606469 |
T |
|
| Q |
114 |
aaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagcaatt |
213 |
Q |
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|||||||||| |||||||||||| ||||||| |||||||||| || || || |||| |||||||| || | || ||||| | | | ||||| |
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| T |
606470 |
aaagtgatttaatgaactacaaaactttccttgaacaagaagaacataatattcgccactgttaccagaaaatttttgttgatattagccagaaacaatt |
606569 |
T |
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| Q |
214 |
ggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
290 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||||||| ||||| || |||| |||||| ||||||| |
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| T |
606570 |
tgttgatatgatactattggatgctgtgttcatcatggagttgtttcttagagagaaaaaaagatgggaacacaaag |
606646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 10502 - 10223
Alignment:
| Q |
14 |
atatctattggacctatccaccataacaacga---aagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagaca |
110 |
Q |
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||||| ||||| |||||||||||||||||| | || |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| | |||| |
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| T |
10502 |
atatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgtttggaca |
10403 |
T |
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| Q |
111 |
agaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagca |
210 |
Q |
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|||| |||||| ||||||||||||| || |||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| || ||| || |
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| T |
10402 |
gcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaaca |
10303 |
T |
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| Q |
211 |
attggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
290 |
Q |
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| T |
10302 |
aatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaag |
10223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 23956 - 23677
Alignment:
| Q |
14 |
atatctattggacctatccaccataacaacga---aagacttgaggaaatgcaagagtacaaacatagatatttccattatttttggaatcgcctagaca |
110 |
Q |
| |
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||||| ||||| |||||||||||||||||| | || |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| | |||| |
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| T |
23956 |
atatccattggtcctatccaccataacaacaacaaaaaacttgaggaaatgcaagaatacaaacataggtattttcattatttctggaatcgtttggaca |
23857 |
T |
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| Q |
111 |
agaaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatcaacagtgagca |
210 |
Q |
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|||| |||||| ||||||||||||| || |||||||||||||| || || ||||||||||||||||||||||| ||| ||||||| || ||| || |
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| T |
23856 |
gcaaaaatgatttgatgaactacaaagaatttcttcaacaagaagatcagaatatacgccgatgttaccaaaagaagttctatgatatcagcaatgaaca |
23757 |
T |
|
| Q |
211 |
attggttgacatgatactattggattctgtgttcatcatggagttgtttctaagagaaaataaaaaatgggagcacaaag |
290 |
Q |
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| ||||||| |||||||| ||||||||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||||| |
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| T |
23756 |
aatggttgatatgatactgttggattctgtcttcatcatggagttatttttaagagaaaacaaaaaatgggaacacaaag |
23677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 37438640 - 37438553
Alignment:
| Q |
113 |
aaaagtgatttcatgaactacaaagttttccttcaacaagaagagcaaaaaatacgccgatgttaccaaaagaaattcacagatatca |
200 |
Q |
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||||||||||| ||||||| |||| ||| || |||||||||||||||| ||||||||||||||||||||||||||| || |||||| |
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| T |
37438640 |
aaaagtgatttaatgaactgcaaaaccttcgttgaacaagaagagcaaaatatacgccgatgttaccaaaagaaattctcaaatatca |
37438553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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