View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_18 (Length: 383)
Name: NF0678_low_18
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 377
Target Start/End: Complemental strand, 4792768 - 4792420
Alignment:
| Q |
29 |
aagtttgggagactatgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccggttacat |
128 |
Q |
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| T |
4792768 |
aagtttgggaggctatgttgaatgagtttggacttccactaggacttcttccactcgccgatgtaatcgaagttagttttgttagaaacaccgattacat |
4792669 |
T |
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| Q |
129 |
gcgtatctagcagaagaagaaagttgaacacacctttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaa |
228 |
Q |
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| T |
4792668 |
gcgtatcttgcagaagaagaaagttgaacacaactttaaattgattggcaagttggtgagttatgatactgaaatcaatggttacatgttgaaaaagaaa |
4792569 |
T |
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| Q |
229 |
attaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttca |
328 |
Q |
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| T |
4792568 |
attaagaagctcaaaggggtgaaagccaaagaactcatgctttggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattcacttca |
4792469 |
T |
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| Q |
329 |
agagtttagctggtatcaccaaaactttcccagttgaggcctatgctac |
377 |
Q |
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| T |
4792468 |
agagtttagctggtatcaccaaaactttcccagttgaggcttttgctac |
4792420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 365
Target Start/End: Complemental strand, 39347815 - 39347634
Alignment:
| Q |
184 |
gtgagttatgatactgaaatcaatggttacatgttgaaaaagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtca |
283 |
Q |
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| T |
39347815 |
gtgagctatgatactgagataacaggttacatttcaaagaagaagattaagaaacttaaaggcgtgaaagctaaggaactcatgttatggccacctgtta |
39347716 |
T |
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| Q |
284 |
atgaaattaatatagatgaaacactcaatggaaagattcacttcaagagtttagctggtatcaccaaaactttcccagttga |
365 |
Q |
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| T |
39347715 |
atgagattactgttgatgaacaaccaactgggaagattcatttcaagagtcttgctggtatcactaagactttccctgttga |
39347634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 365
Target Start/End: Complemental strand, 39345589 - 39345447
Alignment:
| Q |
223 |
aagaaaattaagaagctcaaaggggtgaaagccaaagaactcatgcttcggcctcctgtcaatgaaattaatatagatgaaacactcaatggaaagattc |
322 |
Q |
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| T |
39345589 |
aagaatattaagatgcttaaaggtgttaatgttaaagaactcatgttacggcctcctatcaatgagattattgttgatgaagaaccaactggaaaaattc |
39345490 |
T |
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| Q |
323 |
acttcaagagtttagctggtatcaccaaaactttcccagttga |
365 |
Q |
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| T |
39345489 |
atttcaagagttatggtggtatcaccaagactttccctgttga |
39345447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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