View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_20 (Length: 381)
Name: NF0678_low_20
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 352
Target Start/End: Original strand, 42310294 - 42310641
Alignment:
| Q |
16 |
atgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagttt------------gaaatgttagtccaggcaccaa |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |
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| T |
42310294 |
atgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttttgaacaagtttgaaatgttagtccaggaaacaa |
42310393 |
T |
|
| Q |
104 |
ctcccacaccaacattaatagatccgtccctgcaccctgcacgcctgaaggcctgatatgatagaaaaatcaaaaagagatgtctgacatttaaactcat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42310394 |
ctcccacaccaacattaatagatccgtccctgcaccctgcacgcctgaaggcctgatatgatagaaaaatcaaaa-gagatgtctgacatttaaactcat |
42310492 |
T |
|
| Q |
204 |
tgtaatatcagcagtagaactaacaatatatcagtcaattgggtaataccttaaaaagcatgtcaaaatgttgccactgcccaacatctgtaacatatat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42310493 |
tgtaatatcagcagtagaactaacaatatatcagtcaattgggtaataccttaaaaagcatgtcaaaatgttgccactgcccaacatctgtaacatatat |
42310592 |
T |
|
| Q |
304 |
atttcaatcaatcttttcgatattcaaacgatacctgcaaggttcaagt |
352 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42310593 |
attccaatcaatcttttcgatattcaaacgatacctgcaaggttcaagt |
42310641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 135
Target Start/End: Complemental strand, 30205587 - 30205465
Alignment:
| Q |
13 |
aatatgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttgaaatgttagtccaggcaccaactcccacac |
112 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||| |||| ||||||| |
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| T |
30205587 |
aatatgcataacaattactataatgaagtgttaaattacatactacatggtacatatttgaacaagtttgaaatgttagtgcaggcatcaacccccacac |
30205488 |
T |
|
| Q |
113 |
caacattaatagatccgtccctg |
135 |
Q |
| |
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||| || |||||||||||||||| |
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| T |
30205487 |
caatatgaatagatccgtccctg |
30205465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 51568850 - 51568740
Alignment:
| Q |
240 |
aattgggtaataccttaaaaagcatgtcaaaatgttgccactgcccaacatctgtaacatatatatttcaatcaatcttttcgatattcaaacgatacct |
339 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||| |
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| T |
51568850 |
aattgggacataccttaaaaagcatgtcaaaatgttgccactgaccaacatctgtaacatatatattccaatcaagcttttcgacattcagacgatacct |
51568751 |
T |
|
| Q |
340 |
gcaaggttcaa |
350 |
Q |
| |
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|||| |||||| |
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|
| T |
51568750 |
gcaaagttcaa |
51568740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 39621402 - 39621319
Alignment:
| Q |
54 |
actgcatggtgtatatttgaacaagtttgaaatgttagtccaggcaccaactcccacaccaacattaatagatccgtccctgca |
137 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||| ||| ||||||| |||| |||||||| ||||||| ||||||||| |
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| T |
39621402 |
actgcatggtatatatttgaacaagattgaaatgttagtgcagacaccaacccccataccaacatgaatagatttgtccctgca |
39621319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 39622289 - 39622242
Alignment:
| Q |
16 |
atgcataacaattattataatgaagtgttaaattacatactgcatggt |
63 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||||||||||| |||||| |
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| T |
39622289 |
atgcataacaattactataataaagtgataaattacatactacatggt |
39622242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 43298504 - 43298622
Alignment:
| Q |
16 |
atgcataacaattattataatgaagtgttaaattacatactgcatggtgtatatttgaacaagtttgaaatgttagtccaggcaccaactcccacaccaa |
115 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||||||| |||||||||||| ||||||||| | ||||||| |
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|
| T |
43298504 |
atgcataacaattactataatgaagtgttaaattacatactacattgtatatatttgaacaagttcaaaatgttagtccgggcaccaacctctacaccaa |
43298603 |
T |
|
| Q |
116 |
cattaatagatccgtccct |
134 |
Q |
| |
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||| ||||||||||||||| |
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| T |
43298604 |
catgaatagatccgtccct |
43298622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 136 - 342
Target Start/End: Original strand, 47973992 - 47974189
Alignment:
| Q |
136 |
caccctgcacgcctgaaggcctgatatgatagaaaaatcaaaaagagatgtctgacatttaaactcattgtaatatcagcagtagaactaacaatatatc |
235 |
Q |
| |
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|||||||||||||| ||||||||||| |||||| ||||| | || || ||||||| ||||||||| ||||| || ||| ||| |||||| | |
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| T |
47973992 |
caccctgcacgcctaaaggcctgata-----gaaaaaccaaaagg-gaagttagacattttaactcattgcaatattag---tagcactgacaataactt |
47974082 |
T |
|
| Q |
236 |
agtcaattgggtaataccttaaaaagcatgtcaaaatgttgccactgcccaacatctgtaacatatatatttcaatcaatcttttcgatattcaaacgat |
335 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| | ||||| ||||| |
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| T |
47974083 |
agtcaattcggacataccttaaaaagcatgtcaaaatgttgccattgcccaacatctgtaacatatatattccaatcaagcttttcaacattcagacgat |
47974182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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