View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_24 (Length: 336)

Name: NF0678_low_24
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_24
NF0678_low_24
[»] chr2 (2 HSPs)
chr2 (1-234)||(32249452-32249685)
chr2 (22-179)||(30900507-30900664)
[»] chr6 (1 HSPs)
chr6 (10-197)||(21854222-21854409)
[»] scaffold0020 (1 HSPs)
scaffold0020 (37-116)||(127714-127793)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32249452 - 32249685
Alignment:
Q  1 atctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32249452 atctgttggtcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtc 32249551  T
Q  101 tgtattggtctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaagaattctag 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32249552 tgtattggtctatagatgaagcatttggaatttttggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaagaattctag 32249651  T
Q  201 aacaactttaactacatcttctttgatgatgtcc 234  Q
    |||| |||||||||||||||||||||||||||||    
T  32249652 aacagctttaactacatcttctttgatgatgtcc 32249685  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 179
Target Start/End: Complemental strand, 30900664 - 30900507
Alignment:
Q  22 gtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggtctatagatgaag 121  Q
    ||||||||||||||||||||| |  | |||||||| ||||| || || |||||||| |||||  |||||  ||||||| || | || |||||||| ||||    
T  30900664 gtaggcatgattggagcaagtttatctgcaataacatttgatataatcttgaatttgaaatttaccattataataggtctgaaatgatctatagaagaag 30900565  T
Q  122 catttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatcca 179  Q
    ||||| || |||| |||||||||| ||||||||| || ||||| ||||| || |||||    
T  30900564 catttagagttttaggaagaagagaaataatgtttgaattgaagcctggaaatatcca 30900507  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 21854222 - 21854409
Alignment:
Q  10 tcagaaatgatagtaggcatgattggagcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggt 109  Q
    ||||||||||| | |||||||||||||||||||||  |  |||| || ||||| ||||| ||||| ||||| || ||||||| ||||||| |||| ||||    
T  21854222 tcagaaatgatggaaggcatgattggagcaagtctatcttcaatgacctttgagatgatcttgaaattaaagttggccattgaaataggtctgtactggt 21854321  T
Q  110 ctatagatgaagcatttggaattttcggaagaagagcaataatgttagagttgaatcctggcaaaatccaactggtggtgaagaattc 197  Q
    | || ||||| |||||||| | ||| |||||||| |||||||| || |||||  ||||| ||||||||||||| | ||||||||||||    
T  21854322 caattgatgaggcatttggcacttttggaagaagtgcaataatattggagttatatcctagcaaaatccaactagaggtgaagaattc 21854409  T

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Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Complemental strand, 127793 - 127714
Alignment:
Q  37 gcaagtctgacagcaataacttttgaaatgattttgaatttaaaattagccattgcaataggtttgtattggtctataga 116  Q
    ||||||||| | || | |||||||||||| | ||||||||||||||||||||||||||| ||  | ||||||||||||||    
T  127793 gcaagtctgtctgctagaacttttgaaataactttgaatttaaaattagccattgcaattggcctatattggtctataga 127714  T

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