View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_27 (Length: 321)

Name: NF0678_low_27
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_27
NF0678_low_27
[»] chr4 (9 HSPs)
chr4 (101-227)||(4855943-4856069)
chr4 (101-227)||(5214845-5214971)
chr4 (97-220)||(5173943-5174066)
chr4 (123-224)||(5183305-5183406)
chr4 (97-224)||(5196684-5196811)
chr4 (101-223)||(7143187-7143309)
chr4 (97-220)||(4841453-4841576)
chr4 (101-204)||(5161041-5161144)
chr4 (135-172)||(5203560-5203597)


Alignment Details
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 4856069 - 4855943
Alignment:
Q  101 attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat 200  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  4856069 attccaattcaattgtgtcggttaaaaaagatcgacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtcat 4855970  T
Q  201 ttggaatgagacaatatgttgatgatg 227  Q
    |||||||||||||||| ||||||||||    
T  4855969 ttggaatgagacaatacgttgatgatg 4855943  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 5214845 - 5214971
Alignment:
Q  101 attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat 200  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5214845 attccaattcaattgtgtcggttaaaaaagatagacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtcat 5214944  T
Q  201 ttggaatgagacaatatgttgatgatg 227  Q
    |||||||||| ||||| ||||||||||    
T  5214945 ttggaatgaggcaatacgttgatgatg 5214971  T

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Target: chr4; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 5173943 - 5174066
Alignment:
Q  97 agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg 196  Q
    ||||||||||| ||| || ||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5173943 agaaattccaattcaattttgttggttcaaaaagatcgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcctccaaaatatg 5174042  T
Q  197 tcatttggaatgagacaatatgtt 220  Q
    ||||||||||||||||||||||||    
T  5174043 tcatttggaatgagacaatatgtt 5174066  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 5183305 - 5183406
Alignment:
Q  123 taaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcatttggaatgagacaatatgttga 222  Q
    ||||||||||  ||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5183305 taaaaaagatcaacataatggacttatcacggaacatgctcaatgcttcaataccatcttgctttcaaaatatgtcatttggaatgagacaatatgttga 5183404  T
Q  223 tg 224  Q
    ||    
T  5183405 tg 5183406  T

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Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 224
Target Start/End: Original strand, 5196684 - 5196811
Alignment:
Q  97 agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg 196  Q
    |||||||||||  || ||||||||||||||||||||  ||||||||||  ||||||| ||||||||||||||||| |||||||||||||| | |||||||    
T  5196684 agaaattccaatgcagttgtgtcggttaaaaaagatcaacataatggacttatcacgaaacatgctcaatgcttccataccatcttgctttcgaaatatg 5196783  T
Q  197 tcatttggaatgagacaatatgttgatg 224  Q
    | ||||||||||||||||||||||||||    
T  5196784 ttatttggaatgagacaatatgttgatg 5196811  T

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Target: chr4; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 7143187 - 7143309
Alignment:
Q  101 attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat 200  Q
    ||||||| ||| |||||||||||||||||||| |||| ||| || ||||||   |||||||||||||||||||||||| |||||||||||||||||||||    
T  7143187 attccaattcaattgtgtcggttaaaaaagatcgacaaaatagacctatcagaaaacatgctcaatgcttcaataccaccttgcttccaaaatatgtcat 7143286  T
Q  201 ttggaatgagacaatatgttgat 223  Q
    ||||||||| |||||||||||||    
T  7143287 ttggaatgatacaatatgttgat 7143309  T

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Target: chr4; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 4841576 - 4841453
Alignment:
Q  97 agaaattccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg 196  Q
    ||||||||||| ||| |||||||   ||||||| ||   |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4841576 agaaattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatg 4841477  T
Q  197 tcatttggaatgagacaatatgtt 220  Q
    |||||||||||||||||| |||||    
T  4841476 tcatttggaatgagacaacatgtt 4841453  T

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Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 5161041 - 5161144
Alignment:
Q  101 attccaaatcatttgtgtcggttaaaaaagattgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtcat 200  Q
    ||||||| ||| |||||||| |||||||||||  |||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| || |||    
T  5161041 attccaattcaattgtgtcgattaaaaaagatcaacatgatggacctatcgcggaacatgttcaatgcttcaataccatcttgcttccaaaatttgacat 5161140  T
Q  201 ttgg 204  Q
    ||||    
T  5161141 ttgg 5161144  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 5203560 - 5203597
Alignment:
Q  135 acataatggatctatcacggaacatgctcaatgcttca 172  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5203560 acatgatggacctatcacggaacatgctcaatgcttca 5203597  T

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