View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_29 (Length: 317)
Name: NF0678_low_29
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_29 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 43116375 - 43116499
Alignment:
| Q |
193 |
aaagaaagagtgcagtacttttagctagtatatttattacaacgtggaccaccacctttaattaaaaccacttattcacccttaaccaggactcatgttt |
292 |
Q |
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| T |
43116375 |
aaagaaagagtgaagtacttttagcgagtatatttattacaacgtggaccgccacctttaattaaaaccacttattcgcccttaaccaggactcatgttt |
43116474 |
T |
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| Q |
293 |
agggggttgtggaccgccaccttta |
317 |
Q |
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| T |
43116475 |
agggggttgtggaccgccaccttta |
43116499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 17855693 - 17855733
Alignment:
| Q |
271 |
cccttaaccaggactcatgtttagggggttgtggaccgcca |
311 |
Q |
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| T |
17855693 |
cccttaaccaggactcgtgcttggggggttgtggaccgcca |
17855733 |
T |
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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 33 - 167
Target Start/End: Complemental strand, 2106832 - 2106698
Alignment:
| Q |
33 |
ttcaactgtttgaaaacagtaacattttggtaaaatgtttaatatagaaaaatgtataaaaactgtagagtagaaatgagtacatattagcaatatctaa |
132 |
Q |
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| T |
2106832 |
ttcaactgttgcaaaacaataacatgttggtaaattgtttagaaaagaaaaatgtataaaaaatgaagagtagcaatgagtaaatcttaacaatatctaa |
2106733 |
T |
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| Q |
133 |
ccatttaggaaaggatataaaactaaatgacttca |
167 |
Q |
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| T |
2106732 |
ccaattaggaaaggatataaaactaaatgaattca |
2106698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 2098346 - 2098239
Alignment:
| Q |
59 |
ttggtaaaatgtttaatatagaaaaatgtataaaaactgtagagtagaaatgagtacatattagcaatatctaaccatttaggaaaggatataaaactaa |
158 |
Q |
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| T |
2098346 |
ttggtaaattgtttagaaaagaaaaatgtataaacaatgaagagtagtggtgagtaaatcttaacaatatctaaccaattagg-aagaatatgaaactaa |
2098248 |
T |
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| Q |
159 |
atgacttca |
167 |
Q |
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|||| |||| |
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| T |
2098247 |
atgaattca |
2098239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 2047926 - 2047865
Alignment:
| Q |
82 |
aaatgtataaaaactgtagagtagaaatgagtacatattagcaatatctaaccatttaggaa |
143 |
Q |
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| T |
2047926 |
aaatgtataaaaaatggaaagtaacaatgagtaaatattaacaatatctaaccaattaggaa |
2047865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 26434294 - 26434253
Alignment:
| Q |
267 |
ttcacccttaaccaggactcatgtttagggggttgtggaccg |
308 |
Q |
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| T |
26434294 |
ttcacccttaatcagaactcatgtttaggtggttgtggaccg |
26434253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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