View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_33 (Length: 307)
Name: NF0678_low_33
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 61 - 231
Target Start/End: Complemental strand, 50504859 - 50504689
Alignment:
| Q |
61 |
aatatatagtttgatgaaaaatgagaagggtccctgctccttcaggcagagtagagggcatgacacttagccgacgcatctgcatattaatgttcttaac |
160 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
50504859 |
aatatatagtttgatgaaaaatgagaagggtccctgctccttcaggcagagtagagggcaggacacttagccgacgcatctgcatattaatgttcttaac |
50504760 |
T |
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| Q |
161 |
cgattcaaaggtgaagctcggaagtacgagttgacactgaagaagtattaagaaaggatgtatatggttcc |
231 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50504759 |
cgattcaaaggtgaagctcggaagtacgagttgacactgaagaagtattaagaaaggatgtatatggttcc |
50504689 |
T |
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