View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_34 (Length: 297)
Name: NF0678_low_34
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_34 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 36 - 297
Target Start/End: Original strand, 2212780 - 2213041
Alignment:
| Q |
36 |
aatattgagttagttcaacggaccccaagagttgagacgtcatccatgttatgcactctcatttagaaccttatttccgatttaaatcccccaaaatgta |
135 |
Q |
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| T |
2212780 |
aatattgagtcagttcaacggaccccaagagtcgagacgtcatccatgttatgcactctcatttggaaccttatttccgatttaaatcccccaaaatgta |
2212879 |
T |
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| Q |
136 |
tcctaagagttgttcatcttgaacgactccatcttgcacttcgaagttctacacatgctcctccactgagtccgtccgatccaatgtgtccaactttttc |
235 |
Q |
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| T |
2212880 |
tcctaagagttgttcatcttgaacgactccatcttgcacttcgaagttctacacatgctcctccactgagtccgtccgatccaatgtgtccaactttttc |
2212979 |
T |
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| Q |
236 |
cctcttgtttctccctaaaccttctaatcaaagtcattgtagaggctttgcaaccagttata |
297 |
Q |
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| T |
2212980 |
cctcttgtttctccctaaaccttctaatcaaagtcattgtagaggctttgcaaccagttata |
2213041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 2200111 - 2200310
Alignment:
| Q |
36 |
aatattgagttagttcaacggaccccaagagttgagacgtcatccatgttatgcactctcatttagaaccttatttccgatttaaatcccccaaaatgta |
135 |
Q |
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| T |
2200111 |
aatattgagtcagttcaatggacctcgagagtcgagatgtcaaccatgttatgcactctcatttggaaccttatttccgatttaagtcccccaaaaagga |
2200210 |
T |
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| Q |
136 |
tcctaagagttgttcatcttgaacgactccatcttgca---------cttcgaagttctacacatgctcctccactgagtccgtccgatccaatgtgtcc |
226 |
Q |
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| T |
2200211 |
tcctaagagttgttcctcttgaacgactccagcttgcaacaccaaagtttcgaagttctacacatgctcctccactgagtccgtccgatgcaatgtgtcc |
2200310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 297
Target Start/End: Original strand, 2200324 - 2200397
Alignment:
| Q |
222 |
tgtccaactttttccctcttgtttctccctaaaccttctaatcaaagtcattgtagaggctttgcaaccagttata |
297 |
Q |
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|||||||||||||||||||||| |||||| ||| ||||| |||| |||||||||||||||||||||| ||||||| |
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| T |
2200324 |
tgtccaactttttccctcttgt--ctcccttaacattctagtcaatgtcattgtagaggctttgcaacgagttata |
2200397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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