View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0678_low_39 (Length: 282)
Name: NF0678_low_39
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 55217559 - 55217741
Alignment:
| Q |
43 |
gatgaagctatagcggactccctttcgtcttccaatgacgcgaaagaaatggtcccctatacagcagcaaattccagtaaattctaagattccgcttatt |
142 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
55217559 |
gatgaagctatggcggactccctttcgtcttccaatgacgcgaaagaaatggtcccctatacagtagcaaattccagtaaattataagattccgcttatt |
55217658 |
T |
|
| Q |
143 |
atatattctatataaataaacttactattttggttctaggatattcccattcttctccttccaagtgagttatatgcaaggcc |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
55217659 |
atatattctatataaataaacttactattttagttctaggatattcccattcttctccttccaagtgagctatatacaaggcc |
55217741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 83 times since January 2019
Visitors: 4369