View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_4 (Length: 527)
Name: NF0678_low_4
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 109 - 527
Target Start/End: Original strand, 45975021 - 45975456
Alignment:
| Q |
109 |
ccaccattccagcaaccactgcgaggaggcagaaggaagatgaagaaaacaaagacgggttggtgaagaagtgtgaagaaagctatatcctgcagcttac |
208 |
Q |
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| T |
45975021 |
ccaccattccagcaaccactgcgaggaggcagaaggaagatgatgaaaacaaagacgggttggtgaagaagtgtgaagaaagctatatcctgcagcttac |
45975120 |
T |
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| Q |
209 |
gttagcgaagaggcttgcttctttggcaagtcttgtgtcggagcctgttctcactcctggcactgaaaattgggatgctgagtctgtttcttatcgtcta |
308 |
Q |
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| T |
45975121 |
gttagcgaagaggcttgcttctttggcaagtcttgtgtcggagcctgttctcactcctggcactgaaaattgggatgctgagtctgtttcttatcgtcta |
45975220 |
T |
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| Q |
309 |
tgggtacaaaactaaacaagattgcacaaccatttcattttttaactacgtctcaccatcgcaccaatggttttaaat-----------------cgcgg |
391 |
Q |
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| T |
45975221 |
tgggtacaaaactaaacaagattgcacaaccatttcattttttaactacatctcaccatcgcaccaatggttttaaatcgcggttgtggctcttacgcgg |
45975320 |
T |
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| Q |
392 |
ttaaactatgcatagacttcaaaatctgcaacgacatggcgattgtgatttgtgatattgactgcattatttcgctgcattttaaaactattgaacttta |
491 |
Q |
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| T |
45975321 |
ttaaactatgcatagacttcaaaatctgcaacgacatggcgattgtgatttgtgatattgactgcattatttcgctgcattttaaaactattgaacttta |
45975420 |
T |
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| Q |
492 |
tgttgcggcaaaacattgctgatgcaatcaaattta |
527 |
Q |
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| T |
45975421 |
tgttgcggcaaaacattgttgatgcaatcaaattta |
45975456 |
T |
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