View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_41 (Length: 279)
Name: NF0678_low_41
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 5677814 - 5678016
Alignment:
| Q |
39 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc |
138 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
5677814 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaatttttttatcaagtgtaacttctttgattaaaacatcaagtccc |
5677913 |
T |
|
| Q |
139 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5677914 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcatttgtgagtttgcatctcaatctctattgtct |
5678013 |
T |
|
| Q |
239 |
gtg |
241 |
Q |
| |
|
||| |
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|
| T |
5678014 |
gtg |
5678016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 39 - 240
Target Start/End: Original strand, 5668320 - 5668521
Alignment:
| Q |
39 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtccc |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
5668320 |
gacatcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaattattttatcaagtgtaacttctttgattaaaacatcaagtccc |
5668419 |
T |
|
| Q |
139 |
acacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
238 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5668420 |
acacttttcaagtcacgagagatgcagatatgttattctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtct |
5668519 |
T |
|
| Q |
239 |
gt |
240 |
Q |
| |
|
|| |
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|
| T |
5668520 |
gt |
5668521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 5743432 - 5743629
Alignment:
| Q |
41 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||| |
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| T |
5743432 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac |
5743528 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
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|||||||||||| || | |||||||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
5743529 |
tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgt |
5743628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 5780391 - 5780588
Alignment:
| Q |
41 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||| |
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| T |
5780391 |
catcatcagctaccatatgttctatttggtctttcacaagttatattttttctattatt---tcaagtgtgatttctttgattaaaacatcaagtcccac |
5780487 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
| |
|
|||||||||||| || | |||||||||||| ||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
5780488 |
tcttttcaagtcaagaaatatgcagatatgtgtttctggtggtgaaaaacaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattggctgt |
5780587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 5692106 - 5692242
Alignment:
| Q |
104 |
caagtgtaacatctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtg |
203 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||| |||||| |||||| ||||||| || |
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| T |
5692106 |
caagtgtaacttctttgattaaaacatcaagtcccacccttttcaagtcaggagatatgcagatatgtttttctgacgatggaaaacaagaagctgcgtc |
5692205 |
T |
|
| Q |
204 |
gcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
| |
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|| |||||||||||||||||||||||| ||||||||| |
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| T |
5692206 |
gcctttgtgagtttgcatctcaatctccattgtctgt |
5692242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 5791647 - 5791772
Alignment:
| Q |
115 |
tctttgattaaaacatcaagtcccacacttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| ||||| ||| ||||||||| ||| ||||||||||||||||| |
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| T |
5791647 |
tctttgattaaaacatcaagtcccacactcttcaagtcaagagatatgcagatatgtgtttctgacggtgaaaaacaagaaattgtgtggcgtttgtgag |
5791746 |
T |
|
| Q |
215 |
tttgcatctcaatctctattgtctgt |
240 |
Q |
| |
|
|||||||||||||||| ||||||||| |
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| T |
5791747 |
tttgcatctcaatctccattgtctgt |
5791772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 5751114 - 5751313
Alignment:
| Q |
41 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| | | | ||||| | ||||||||||||||||||||||||| |
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|
| T |
5751114 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5751213 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
| |
|
||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5751214 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt |
5751313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 240
Target Start/End: Original strand, 5788073 - 5788272
Alignment:
| Q |
41 |
catcatcagctaccatatgttctatttggtctttcacaagttatatcttttcaannnnnnnatcaagtgtaacatctttgattaaaacatcaagtcccac |
140 |
Q |
| |
|
||||||||||||| || ||||||||||||||| ||||||||||||||||||| | | | ||||| | ||||||||||||||||||||||||| |
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|
| T |
5788073 |
catcatcagctactatgtgttctatttggtctgtcacaagttatatcttttctattagtttaacgagtgtgatttctttgattaaaacatcaagtcccaa |
5788172 |
T |
|
| Q |
141 |
acttttcaagtcacgagagatgcagatatgtttttctaacgatgaaaaacatgaagctgtgtggcgtttgtgagtttgcatctcaatctctattgtctgt |
240 |
Q |
| |
|
||||| ||||| ||| ||| |||||||| ||| | ||| |||| | || |||| ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
5788173 |
ccttttgaagtcctgaggtatgaagatatgtgtttatgacggtgaacatcaagaagttgtgtggcgtttgtgagtttgcatctcaatctccattgtctgt |
5788272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 5692070 - 5692110
Alignment:
| Q |
41 |
catcatcagctaccatatgttctatttggtctttcacaagt |
81 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
5692070 |
catcatcagctaccatatgttctatttggtctttcacaagt |
5692110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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