View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_46 (Length: 268)

Name: NF0678_low_46
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_46
NF0678_low_46
[»] chr2 (4 HSPs)
chr2 (119-244)||(18987140-18987265)
chr2 (37-124)||(18987467-18987554)
chr2 (184-244)||(24786502-24786562)
chr2 (192-238)||(44586174-44586220)
[»] scaffold0290 (2 HSPs)
scaffold0290 (120-237)||(13827-13944)
scaffold0290 (37-124)||(14146-14233)
[»] chr3 (9 HSPs)
chr3 (120-244)||(27870226-27870350)
chr3 (37-124)||(27870553-27870640)
chr3 (120-178)||(16642571-16642629)
chr3 (192-236)||(17791238-17791282)
chr3 (192-236)||(19099678-19099722)
chr3 (192-244)||(5943671-5943723)
chr3 (120-166)||(14054847-14054893)
chr3 (120-178)||(14062564-14062622)
chr3 (192-236)||(14481343-14481387)
[»] scaffold0094 (2 HSPs)
scaffold0094 (120-237)||(4423-4540)
scaffold0094 (38-124)||(4742-4828)
[»] chr6 (6 HSPs)
chr6 (123-237)||(19547061-19547175)
chr6 (38-124)||(19547381-19547467)
chr6 (192-244)||(9191393-9191445)
chr6 (184-244)||(14970421-14970481)
chr6 (123-178)||(14989158-14989213)
chr6 (184-244)||(8403510-8403570)
[»] chr4 (5 HSPs)
chr4 (120-227)||(18556646-18556753)
chr4 (38-124)||(18556956-18557042)
chr4 (120-244)||(11098105-11098236)
chr4 (192-238)||(16284750-16284796)
chr4 (192-244)||(18231190-18231242)
[»] chr7 (3 HSPs)
chr7 (184-244)||(13477372-13477432)
chr7 (185-244)||(20026330-20026389)
chr7 (189-238)||(37945538-37945587)
[»] scaffold1269 (1 HSPs)
scaffold1269 (120-178)||(252-310)
[»] scaffold0145 (1 HSPs)
scaffold0145 (192-238)||(12921-12967)
[»] chr8 (1 HSPs)
chr8 (192-238)||(29294217-29294263)
[»] chr5 (1 HSPs)
chr5 (184-224)||(17458283-17458323)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 119 - 244
Target Start/End: Complemental strand, 18987265 - 18987140
Alignment:
Q  119 catcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  18987265 catcataccatattcctcaatcttggtcttaagttgtttacatattcgttatcataacatctaccctctttacaactaggttctacctcaccatcatcat 18987166  T
Q  219 taactccttcatacttattcatctca 244  Q
    |||||||||||||||||||| |||||    
T  18987165 taactccttcatacttattcttctca 18987140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 18987554 - 18987467
Alignment:
Q  37 gacatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||    
T  18987554 gacatcatcactctcagcatctttatgatatagacctcatcaactttcaccgcacatacttataagtttacataacattactcatcat 18987467  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 24786502 - 24786562
Alignment:
Q  184 ctctttacaactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  24786502 ctctttacaactaggtcctacctcaccatcgtcattaactccttcatacttattcttctca 24786562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 44586220 - 44586174
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattc 238  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  44586220 aactaggttcttcctcaccattgccattaactctttcatacttattc 44586174  T

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Target: scaffold0290 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 13944 - 13827
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcatt 219  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  13944 atcataccatattcctcattcttggtcttaagttgtttacttattcgttatcataacatctactctatttacaagtaggttctacctcaccattgtcatt 13845  T
Q  220 aactccttcatacttatt 237  Q
    ||||||||||||||||||    
T  13844 aactccttcatacttatt 13827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 14233 - 14146
Alignment:
Q  37 gacatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  14233 gacatcatcactctcagcatctttatgatatagacctcatcaactttcaccgcacgtacttataagtttacataacattgctcatcat 14146  T

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Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 27870350 - 27870226
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcatt 219  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||    
T  27870350 atcataccatattcctcattcttagtcttaagttgtttacttattcgttatcataacatctcctctctttacaactaggttctacctcaccaccgtcatt 27870251  T
Q  220 aactccttcatacttattcatctca 244  Q
    |||||||||||||| |||| |||||    
T  27870250 aactccttcatactaattcttctca 27870226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 27870640 - 27870553
Alignment:
Q  37 gacatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    ||||| |||||||||| |||||||||||||||||||||||  ||||| | ||  | || |||||||||||||||||||||||||||||    
T  27870640 gacataatcactctcaacatctttatgatatagacctcatcgactttcatcgaacatatttataagtttacataacattactcatcat 27870553  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 16642571 - 16642629
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacat 178  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||| |||||| ||||    
T  16642571 atcataccatattcctcattcttggtctcaagttgttttcttattcgctatcattacat 16642629  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 17791238 - 17791282
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttat 236  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  17791238 aactaggttcttcctcaccattgtcattaactctttcatacttat 17791282  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 19099678 - 19099722
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttat 236  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||    
T  19099678 aactaggttcttcctcaccattgtcattaactctttcatacttat 19099722  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 5943723 - 5943671
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    |||| |||||| ||||||||||||||||||||| |||| |||||||| |||||    
T  5943723 aacttggttcttcctcaccattgtcattaactctttcaaacttattcttctca 5943671  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 14054893 - 14054847
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcg 166  Q
    |||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  14054893 atcataccatattcttcattcttggtctcaagttgttttcttattcg 14054847  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 14062622 - 14062564
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacat 178  Q
    ||||| |||||||||||| ||||||||| ||||| ||| |||||||| |||||| ||||    
T  14062622 atcatgccatattcctcattcttggtctcaagtttttttcttattcgctatcattacat 14062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 14481387 - 14481343
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttat 236  Q
    ||||||||||| |||| ||||| |||||||||| |||||||||||    
T  14481387 aactaggttctccctctccattttcattaactctttcatacttat 14481343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 120 - 237
Target Start/End: Complemental strand, 4540 - 4423
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcatt 219  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||| ||||| ||||||    
T  4540 atcataccatattcctcattcttagtcttaagttgtttacttattcgttatcataacatctcctccctttacaactaggttctacctaaccatcgtcatt 4441  T
Q  220 aactccttcatacttatt 237  Q
    ||||||||||||| ||||    
T  4440 aactccttcatacatatt 4423  T

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Target: scaffold0094; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 4828 - 4742
Alignment:
Q  38 acatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    ||||||||||||||| ||||||||||||| ||||||||| |||||| | ||   ||| ||||| |||||||||||||||||||||||    
T  4828 acatcatcactctcatcatctttatgatacagacctcatcaactttcatcgaatgtatttataggtttacataacattactcatcat 4742  T

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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 19547175 - 19547061
Alignment:
Q  123 ataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcattaac 222  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||||| ||||| |||||||||    
T  19547175 ataccatatttctcattcttagtcttaagttgtttacttattcgttatcataacatctcctccctttacaaataggttctacctaaccatcgtcattaac 19547076  T
Q  223 tccttcatacttatt 237  Q
    |||||||||| ||||    
T  19547075 tccttcatacatatt 19547061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 19547467 - 19547381
Alignment:
Q  38 acatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    ||||||||||||||  ||||||||||||| | ||||||| |||||| |  || |||| ||||| |||||||||||||||||||||||    
T  19547467 acatcatcactctcttcatctttatgatacaaacctcatcaactttcattgcccgtatttataggtttacataacattactcatcat 19547381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 9191393 - 9191445
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||    
T  9191393 aactaggttcttcctcaccattgtcattaactctttcatacttattcctctca 9191445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 14970421 - 14970481
Alignment:
Q  184 ctctttacaactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    |||||||||||||| | |||| ||||||| ||||||||||||||||||||||||| |||||    
T  14970421 ctctttacaactagatactacttcaccatcgtcattaactccttcatacttattcttctca 14970481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 14989213 - 14989158
Alignment:
Q  123 ataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacat 178  Q
    |||||| |||||||| |||||| || ||||||||| ||||||||||||||| ||||    
T  14989213 ataccaaattcctcattcttggcctcaagttgttttcttattcgttatcattacat 14989158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 8403570 - 8403510
Alignment:
Q  184 ctctttacaactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    |||| |||||||||||||| || |||||| ||||||||||| ||| || |||||| |||||    
T  8403570 ctctatacaactaggttcttccccaccatcgtcattaactctttcgtaattattcttctca 8403510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 18556753 - 18556646
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatctaccctctttacaactaggttctacctcaccattgtcatt 219  Q
    ||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||||| | | |||||||| |||||||||||| ||||| ||||||    
T  18556753 atcataccatatttctcattcttagtcttaatttgtttacttattcgttatcataacatctcctccctttacaaataggttctacctaaccatcgtcatt 18556654  T
Q  220 aactcctt 227  Q
    ||||||||    
T  18556653 aactcctt 18556646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 38 - 124
Target Start/End: Complemental strand, 18557042 - 18556956
Alignment:
Q  38 acatcatcactctcagcatctttatgatatagacctcattaacttttaccgcgcgtacttataagtttacataacattactcatcat 124  Q
    ||||||||||||||  ||||||||||||| | ||||||| |||||| | ||| |||| ||||| |||||||||||||||||||||||    
T  18557042 acatcatcactctcttcatctttatgatacaaacctcatcaactttcatcgcacgtatttataggtttacataacattactcatcat 18556956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 11098236 - 11098105
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacatcta-------ccctctttacaactaggttctacctcaccat 212  Q
    |||||||| ||||||||| |||| |||||||| | ||||||| ||| |||||||  ||| ||       | |||||||||||||||| ||| ||||||||    
T  11098236 atcataccttattcctcattcttagtcttaagatatttacttgttcattatcatttcatataatgtctcctctctttacaactaggtcctaactcaccat 11098137  T
Q  213 tgtcattaactccttcatacttattcatctca 244  Q
     |||||||| |||||||||||||||| |||||    
T  11098136 cgtcattaattccttcatacttattcttctca 11098105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 16284796 - 16284750
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattc 238  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  16284796 aactaggttctccctcaccattgccattaactctttcatacttattc 16284750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 18231242 - 18231190
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    ||||||||||| ||||||||||| |||||| || ||||||||||||| |||||    
T  18231242 aactaggttcttcctcaccattgccattaattctttcatacttattcttctca 18231190  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 13477432 - 13477372
Alignment:
Q  184 ctctttacaactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  13477432 ctctttacaactaggtcctacctcaccatcgtcattaactccttcatacttattcttctca 13477372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 20026330 - 20026389
Alignment:
Q  185 tctttacaactaggttctacctcaccattgtcattaactccttcatacttattcatctca 244  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||| |||||    
T  20026330 tctttacaactaggtcctacctcaccatcgtcattaactccttcatactgattcttctca 20026389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 37945587 - 37945538
Alignment:
Q  189 tacaactaggttctacctcaccattgtcattaactccttcatacttattc 238  Q
    |||||||||||||| |||||||||  |||||||||| |||||||| ||||    
T  37945587 tacaactaggttcttcctcaccatcatcattaactctttcatactcattc 37945538  T

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Target: scaffold1269 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 252 - 310
Alignment:
Q  120 atcataccatattcctcaatcttggtcttaagttgtttacttattcgttatcataacat 178  Q
    |||||| ||||||||||| ||||||||| ||||||||| |||||||| |||||| ||||    
T  252 atcatatcatattcctcattcttggtctcaagttgttttcttattcgctatcattacat 310  T

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Target: scaffold0145 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 12921 - 12967
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattc 238  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||    
T  12921 aactaggttctccctcaccattgccattaactctttcatacttattc 12967  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 29294217 - 29294263
Alignment:
Q  192 aactaggttctacctcaccattgtcattaactccttcatacttattc 238  Q
    ||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  29294217 aactaggttctccctcaccatagtcattaactctttcatacttattc 29294263  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 17458283 - 17458323
Alignment:
Q  184 ctctttacaactaggttctacctcaccattgtcattaactc 224  Q
    |||| |||||||||||||| ||||||||| |||||||||||    
T  17458283 ctctatacaactaggttctccctcaccatcgtcattaactc 17458323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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