View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_49 (Length: 262)

Name: NF0678_low_49
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_49
NF0678_low_49
[»] chr2 (16 HSPs)
chr2 (48-236)||(39382222-39382410)
chr2 (48-225)||(39199491-39199668)
chr2 (48-216)||(39220057-39220225)
chr2 (48-199)||(39450411-39450562)
chr2 (73-186)||(39214787-39214900)
chr2 (54-190)||(39458130-39458266)
chr2 (54-189)||(39399028-39399163)
chr2 (50-190)||(39601912-39602052)
chr2 (50-112)||(39129482-39129544)
chr2 (51-108)||(39422501-39422558)
chr2 (54-108)||(39136284-39136338)
chr2 (63-105)||(39479182-39479224)
chr2 (50-107)||(27154994-27155051)
chr2 (50-99)||(39391677-39391726)
chr2 (159-196)||(39479278-39479315)
chr2 (50-107)||(39495554-39495611)
[»] chr6 (1 HSPs)
chr6 (49-189)||(16112346-16112486)


Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 39382222 - 39382410
Alignment:
Q  48 tgaagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttcta 147  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39382222 tgaagctctttgcagcactcttcagtatctctctttatggactgtaatctcttctcttctagtttctgcttccatttgcattccacaaataattcttcta 39382321  T
Q  148 acagcgtaaggtctttcttcagcgaggaaaacgatttatcagtcaatttctttgaaaatgaaagatcatcttcatcttcatcttcatct 236  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39382322 acagcgtaaggtctttcttcagcgaggaaaacgatttgtcagtcaatttctttgaaaatgaaagatcatcttcatcttcatcttcatct 39382410  T

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Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 48 - 225
Target Start/End: Original strand, 39199491 - 39199668
Alignment:
Q  48 tgaagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttcta 147  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||| | |||| |||||| ||||||||||  ||||||||||||||    
T  39199491 tgaagctctttgcagcactcttcagtatctctctttatggactgcaatcttttctcttcaactttctgcttccttttgcattccttaaataattcttcta 39199590  T
Q  148 acagcgtaaggtctttcttcagcgaggaaaacgatttatcagtcaatttctttgaaaatgaaagatcatcttcatctt 225  Q
     ||||||||| |||||||||||||||||||| ||||||||  | |||||||| || ||||||| || |||| ||||||    
T  39199591 gcagcgtaagctctttcttcagcgaggaaaatgatttatctcttaatttcttcgacaatgaaatattatctccatctt 39199668  T

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Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 216
Target Start/End: Complemental strand, 39220225 - 39220057
Alignment:
Q  48 tgaagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttcta 147  Q
    ||||| ||||||||||||| |||||| |||||||||||||||||||||||  ||||||| | |||| |||||| ||| || ||| ||||||||| |||||    
T  39220225 tgaagatctttgcagcactcttcagtttctctctttatggactgtaatcttctctcttcaactttctgcttccttttacactcctcaaataatttttcta 39220126  T
Q  148 acagcgtaaggtctttcttcagcgaggaaaacgatttatcagtcaatttctttgaaaatgaaagatcat 216  Q
    ||| || |||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||    
T  39220125 acaccgcaaggtctttcttcagcgaggaaaatgatttatcagtcaatttcttcgacaatgaaatatcat 39220057  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 48 - 199
Target Start/End: Complemental strand, 39450562 - 39450411
Alignment:
Q  48 tgaagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttcta 147  Q
    ||||||||||||||||| |  ||| ||||| |||| |||||||| |||||||| ||||||| |||| |||||| ||| |||||| ||||||||| |||||    
T  39450562 tgaagctctttgcagcagtcctcaatatctgtcttgatggactgcaatctcttttcttctactttctgcttccttttacattcctcaaataatttttcta 39450463  T
Q  148 acagcgtaaggtctttcttcagcgaggaaaacgatttatcagtcaatttctt 199  Q
    |||  |||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39450462 acaatgtaaggtctttcttcagcgaggaaaatgatttatcagttaatttctt 39450411  T

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Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 39214900 - 39214787
Alignment:
Q  73 tatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttctaacagcgtaaggtctttcttcagcga 172  Q
    ||||||||||||  ||||| ||||||||||| |||| || || ||||| |||||||||| ||||||||| ||||||||  | ||||||||||||||||||    
T  39214900 tatctctctttagagactgaaatctcttctcatctacttgcaccttccttttgcattcctcaaataatttttctaacatagcaaggtctttcttcagcga 39214801  T
Q  173 ggaaaacgatttat 186  Q
    |||||| |||||||    
T  39214800 ggaaaatgatttat 39214787  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 39458266 - 39458130
Alignment:
Q  54 tctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttctaacagcg 153  Q
    |||||||||||||  ||| ||||||||||||||||||| |||||||||||||||| ||    | ||| |||||| ||| ||||| ||| ||||| ||  |    
T  39458266 tctttgcagcactcctcaatatctctctttatggactgcaatctcttctcttctacttgtctcgtccttttgcaatcctcaaatgatttttctaccaatg 39458167  T
Q  154 taaggtctttcttcagcgaggaaaacgatttatcagt 190  Q
    | || ||||||||||||||| |||| |||| ||||||    
T  39458166 tgagttctttcttcagcgagaaaaatgattcatcagt 39458130  T

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Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 39399028 - 39399163
Alignment:
Q  54 tctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttctaacagcg 153  Q
    ||||| ||||| | |||| ||||||||||||||||||| |||||||||||||||| ||||  ||||| |||||||| |  ||| |||| ||||| ||       
T  39399028 tctttccagcagtcttcaatatctctctttatggactgcaatctcttctcttctactttcctcttccttttgcatttcttaaacaatttttctaccaatt 39399127  T
Q  154 taaggtctttcttcagcgaggaaaacgatttatcag 189  Q
    |||  |||||||| ||||| ||||| ||||||||||    
T  39399128 taacttctttcttgagcgatgaaaatgatttatcag 39399163  T

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Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 39602052 - 39601912
Alignment:
Q  50 aagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttctaac 149  Q
    ||||||||||| |||||  | | ||||| ||||||||||||| ||||| |||||||||| ||||  ||||   |||| ||||  |||| | | |||||||    
T  39602052 aagctctttgcggcactcctgaatatctatctttatggactgcaatctattctcttctaatttcgtcttcttattgccttcctgaaatgagttttctaac 39601953  T
Q  150 agcgtaaggtctttcttcagcgaggaaaacgatttatcagt 190  Q
    |  | |||| ||||||||||||||||||| |||||||||||    
T  39601952 aatgcaaggcctttcttcagcgaggaaaatgatttatcagt 39601912  T

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Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 39129544 - 39129482
Alignment:
Q  50 aagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagttt 112  Q
    |||||||||| ||||||  ||| ||||||||||||||||||| ||||||||||||||| ||||    
T  39129544 aagctctttggagcactcctcaatatctctctttatggactgcaatctcttctcttcttgttt 39129482  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 39422501 - 39422558
Alignment:
Q  51 agctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttcta 108  Q
    ||||||||||||||||  ||| ||||||||||||||||||| ||| ||||||||||||    
T  39422501 agctctttgcagcacttctcaatatctctctttatggactgcaatatcttctcttcta 39422558  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 39136338 - 39136284
Alignment:
Q  54 tctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttcta 108  Q
    |||| ||||||||  ||| ||||||||||||||||||| |||||| |||||||||    
T  39136338 tcttcgcagcactcctcaatatctctctttatggactgcaatctcctctcttcta 39136284  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 39479182 - 39479224
Alignment:
Q  63 cactgttcagtatctctctttatggactgtaatctcttctctt 105  Q
    |||| |||| ||||||||||||||||||| |||||||||||||    
T  39479182 cactcttcaatatctctctttatggactgcaatctcttctctt 39479224  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 27154994 - 27155051
Alignment:
Q  50 aagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttct 107  Q
    |||||||||| ||||||  ||| ||||||||||||||||||| ||||| | |||||||    
T  27154994 aagctctttggagcactcctcaatatctctctttatggactgcaatctttcctcttct 27155051  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 39391677 - 39391726
Alignment:
Q  50 aagctctttgcagcactgttcagtatctctctttatggactgtaatctct 99  Q
    ||||||||||||||||| |||| ||||| ||||||||||| | |||||||    
T  39391677 aagctctttgcagcactcttcaatatctttctttatggacagcaatctct 39391726  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 39479278 - 39479315
Alignment:
Q  159 tctttcttcagcgaggaaaacgatttatcagtcaattt 196  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  39479278 tctttcttcagcgaggaaaatgatttatcagtcgattt 39479315  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 39495554 - 39495611
Alignment:
Q  50 aagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttct 107  Q
    |||||||||| ||| ||  ||| ||||||||||||||||||| ||||||| |||||||    
T  39495554 aagctctttggagcgctcctcaatatctctctttatggactgcaatctctcctcttct 39495611  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 16112486 - 16112346
Alignment:
Q  49 gaagctctttgcagcactgttcagtatctctctttatggactgtaatctcttctcttctagtttcagcttccatttgcattccacaaataattcttctaa 148  Q
    |||||||||| || || | |||| ||||||||||||||||||| ||| |||||||||||  | ||  ||||| |||||| | |  ||| |||| |||||     
T  16112486 gaagctctttacaacattcttcaatatctctctttatggactgcaatttcttctcttcttctgtcctcttccttttgcaattcttaaacaatttttctac 16112387  T
Q  149 cagcgtaaggtctttcttcagcgaggaaaacgatttatcag 189  Q
    ||   |||  || ||||||||||||||||| ||||||||||    
T  16112386 caaattaacttcattcttcagcgaggaaaatgatttatcag 16112346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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