View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_52 (Length: 260)

Name: NF0678_low_52
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_52
NF0678_low_52
[»] chr2 (5 HSPs)
chr2 (1-252)||(18986854-18987105)
chr2 (28-194)||(24786624-24786790)
chr2 (28-213)||(23655921-23656106)
chr2 (143-250)||(44585938-44586041)
chr2 (28-94)||(44586040-44586106)
[»] chr3 (16 HSPs)
chr3 (1-251)||(27869941-27870191)
chr3 (28-250)||(13928684-13928903)
chr3 (33-213)||(14481089-14481269)
chr3 (1-213)||(16359045-16359257)
chr3 (1-213)||(21975642-21975854)
chr3 (1-213)||(21998073-21998285)
chr3 (10-205)||(19185312-19185507)
chr3 (81-187)||(22924385-22924491)
chr3 (1-179)||(22160237-22160415)
chr3 (1-150)||(5943487-5943636)
chr3 (57-250)||(13926286-13926476)
chr3 (114-162)||(14054601-14054649)
chr3 (33-213)||(17791357-17791537)
chr3 (33-213)||(19099797-19099977)
chr3 (114-213)||(16642814-16642913)
chr3 (114-162)||(4712350-4712398)
[»] chr6 (8 HSPs)
chr6 (9-250)||(19546767-19547012)
chr6 (33-250)||(7682035-7682248)
chr6 (1-213)||(8403258-8403470)
chr6 (98-213)||(9191571-9191686)
chr6 (105-213)||(10906195-10906303)
chr6 (50-183)||(14970565-14970698)
chr6 (114-162)||(14979813-14979861)
chr6 (114-162)||(14988925-14988973)
[»] chr4 (9 HSPs)
chr4 (1-250)||(18556343-18556596)
chr4 (28-213)||(11556395-11556580)
chr4 (1-213)||(15872314-15872526)
chr4 (1-213)||(15889906-15890118)
chr4 (28-213)||(11097857-11098043)
chr4 (8-213)||(12229341-12229546)
chr4 (28-192)||(18220279-18220443)
chr4 (35-214)||(30275514-30275693)
chr4 (28-213)||(16284496-16284682)
[»] scaffold0094 (1 HSPs)
scaffold0094 (1-252)||(4127-4382)
[»] scaffold0290 (1 HSPs)
scaffold0290 (110-224)||(13649-13763)
[»] chr5 (5 HSPs)
chr5 (28-211)||(13937394-13937578)
chr5 (33-250)||(24831455-24831668)
chr5 (1-213)||(24759211-24759423)
chr5 (49-213)||(23960375-23960539)
chr5 (114-190)||(17458485-17458561)
[»] scaffold1001 (1 HSPs)
scaffold1001 (78-214)||(1544-1680)
[»] scaffold0166 (1 HSPs)
scaffold0166 (1-213)||(1705-1917)
[»] scaffold0737 (1 HSPs)
scaffold0737 (28-189)||(3155-3316)
[»] chr7 (7 HSPs)
chr7 (28-213)||(13477125-13477310)
chr7 (1-141)||(37945357-37945497)
chr7 (98-213)||(22614568-22614683)
chr7 (28-247)||(20026451-20026666)
chr7 (28-194)||(4531253-4531419)
chr7 (98-213)||(11655650-11655759)
chr7 (114-162)||(48377331-48377379)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1-205)||(10535-10740)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-188)||(14661-14848)
[»] chr8 (2 HSPs)
chr8 (28-194)||(29294331-29294497)
chr8 (114-163)||(23659051-23659100)
[»] scaffold0048 (2 HSPs)
scaffold0048 (98-162)||(52635-52699)
scaffold0048 (98-151)||(87134-87187)
[»] scaffold0145 (1 HSPs)
scaffold0145 (28-250)||(13035-13254)
[»] chr1 (2 HSPs)
chr1 (114-213)||(13881756-13881855)
chr1 (114-213)||(51626492-51626591)
[»] scaffold0091 (1 HSPs)
scaffold0091 (114-162)||(29575-29623)
[»] scaffold1269 (1 HSPs)
scaffold1269 (114-162)||(494-542)
[»] scaffold0319 (1 HSPs)
scaffold0319 (114-162)||(13120-13168)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 18987105 - 18986854
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18987105 acattcatagtcatttatacgtcaactattctcctaatctgaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 18987006  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||    
T  18987005 ttccctcaccaagacttcattattattcaaggttttattctctcgataccggtcattattattatcgtcaaagattataactattacctcttatttgatt 18986906  T
Q  201 tcctattcatcttaatttctctcttctaattgattcacatcttattcatctc 252  Q
     | ||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  18986905 ccttattcatcttaatttatctcttctaattgattcccatcttattcatctc 18986854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 24786624 - 24786790
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| |||||||||| || |||||||||| |||||  |||||| ||||||||||   || || |||||| ||||||  ||||||||     
T  24786624 attcccctaatcttaacttcgttctaatttatagttattatctcaccttatcattaatttcgacttcaacaagtttcctcactaagactatattataatc 24786723  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat 194  Q
    |||||||| ||||||||||| |  || |||||||||||| ||||  ||||||||||||| |||||||    
T  24786724 caaggtttcattctctcgattctagttattattattatcgtcaaccattataactattaactcttat 24786790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 23656106 - 23655921
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| || ||||||| |||||| |||||| |||||  | |||| | ||||||||   ||||| | |||| |||||| ||||||||||    
T  23656106 attcccctaatcttaacttcattctaatttaaagtaattatctcaccttattattaatctcgacttcaacaactttcttcactaagactacattataatt 23656007  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    ||| |||| |||||||||||||  ||||||||||||||| ||||  ||||||||| ||||| |||||    |||||||||||||||    
T  23656006 caatgtttcattctctcgatactagtcattattattatcgtcaaccattataactgttaccacttatcctttttcctattcatctt 23655921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 44586041 - 44585938
Alignment:
Q  143 tcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttctaattgattcacatct 242  Q
    |||||||  ||| ||||||||||| ||||  |||||||||||||||||||||    |||||||||||||    |||| |||||||||||||| | ||| |    
T  44586041 tcgatactagtcgttattattatcgtcaaccattataactattacctcttatcctatttcctattcatc----tttccctcttctaattgatccccattt 44585946  T
Q  243 tattcatc 250  Q
    ||||||||    
T  44585945 tattcatc 44585938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 44586106 - 44586040
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttc 94  Q
    |||| |||||||| ||| || ||||||| ||||||||||||| |||||| |||||| |||| |||||    
T  44586106 attcccctaatcttaacttcattctaatttaaagttattatctcacctcatcattaatttcaacttc 44586040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 27870191 - 27869941
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||     
T  27870191 acattcatcgtcatttatacgtcaaccattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtaattactttcaacttcataaat 27870092  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||| || ||    
T  27870091 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggttattattattatcgtcaaacattatcactattacctcttatctggtt 27869992  T
Q  201 tcctattcatcttaatttctctcttctaattgattcacatcttattcatct 251  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  27869991 tcctattcatcttaatttctctcttctaatcgattcccatcttattcatct 27869941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 28 - 250
Target Start/End: Complemental strand, 13928903 - 13928684
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||||||||| || ||| || ||||| | ||||||||||| | || ||  || ||||||||||||||   ||||| |||| |||||||||||||||||||    
T  13928903 attctcctaaccttaacttcattctattttaaagttattaccccatcttatctttactttcgacttcagcaactttcctcgccaagacttcattataatt 13928804  T
Q  128 c-aaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttc 226  Q
      ||||  |||||||||||||||||||| ||||  ||||| ||||| ||||||||||||||||||||| | | ||||||||||||    |||||||||||    
T  13928803 ttaaggagttattctctcgataccggtcgttatatttatcgtcaaatattataactattacctcttatcttccttcctattcatc----tttctctcttc 13928708  T
Q  227 taattgattcacatcttattcatc 250  Q
    |||||||||| | |||||||||||    
T  13928707 taattgattcccgtcttattcatc 13928684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 14481269 - 14481089
Alignment:
Q  33 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaagg 132  Q
    |||||||| |||  ||||||||| |||||||| | || |||||  |||||| ||| ||||||   ||||| |||||| |||||| |||||||||||||||    
T  14481269 cctaatcttaactccgttctaatttaaagttactgtctcaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 14481170  T
Q  133 ttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    |||||||||||||||||  ||||||||||||||| ||||  |||||||||||||||||||||   |||||| |||||||||    
T  14481169 ttttattctctcgatactagtcattattattatcgtcaaccattataactattacctcttatcctctttcccattcatctt 14481089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 16359257 - 16359045
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| ||||||||||||| ||     ||| |||||| ||| ||  ||||    
T  16359257 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaac 16359158  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||||||||||||||||||||| ||||||||||||||| |||||  ||||||||||| |||||  |||||||||||| | |||||  ||||    
T  16359157 tttcctcactaagacttcattataattcaagattttattctctcgatgccggttgttattattatcgtcaaactttataactattatcgcttatccgctt 16359058  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  16359057 tcctactcatctt 16359045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21975642 - 21975854
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| |||| |||||||| ||| |  ||| |||| | ||||||  ||||    
T  21975642 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaac 21975741  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||| |||  |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||  ||||||| |||||  ||||    
T  21975742 tttcctcactaaggcttatttataattcaagattttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctt 21975841  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  21975842 tcctactcatctt 21975854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21998073 - 21998285
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| |||| |||||||| ||| |  ||| |||| | ||||||  ||||    
T  21998073 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaac 21998172  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||| |||  |||||||||||| |||||||||||||||||||||  ||||||||||||||||| ||||||  ||||||| |||||  ||||    
T  21998173 tttcctcactaaggcttatttataattcaagattttattctctcgataccggttgttattattatcatcaaacattatatttattaccgcttatccgctt 21998272  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  21998273 tcctactcatctt 21998285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 19185312 - 19185507
Alignment:
Q  10 gtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcac 109  Q
    ||||| ||||| || |||||||||||||||| ||| |  | ||||| | ||||||||||| ||  |  ||| |||||| |||||   |||||| ||||||    
T  19185312 gtcatctatacatcgactattctcctaatcttaacttaatcctaatttgaagttattatctcattttatcagtacttttgactttagaaactttcctcac 19185411  T
Q  110 caagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttccta 205  Q
     |||||||||||| |||||||| |||||||||||| ||||| ||  ||||||||||| ||||| ||||||||||||||| |||||  |||||||||    
T  19185412 taagacttcattacaattcaagattttattctctcaataccagttgttattattatcgtcaaacattataactattaccgcttatccgctttccta 19185507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 22924385 - 22924491
Alignment:
Q  81 ttactttcgacttcctaaacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataa 180  Q
    ||||||||||||||   ||||| |||||| ||||||| ||||||||| ||||  |||||||||||||| ||||| ||||||||||| ||||| |||||||    
T  22924385 ttactttcgacttcaacaactttcctcactaagactttattataatttaaggagttattctctcgatatcggtctttattattatcgtcaaacattataa 22924484  T
Q  181 ctattac 187  Q
    |||||||    
T  22924485 ctattac 22924491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 22160237 - 22160415
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| |||| |||||||| ||| |  ||| |||| | ||||||  ||||    
T  22160237 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatactcttgacttcagaaac 22160336  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattata 179  Q
    ||  ||||| ||| |||  ||||||||| || |||||||||||||||||||||  ||||||||||| ||||| ||||||    
T  22160337 ttttctcactaaggcttatttataattctagattttattctctcgataccggttgttattattatcgtcaaacattata 22160415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 5943636 - 5943487
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| |  || ||||||||||||| ||  | |||||||| | || |||||||| |||||  ||||||| ||| |||||   |||    
T  5943636 acattcctcgtcatctatacattgaccattctcctaatcttaattttgttctaatttgaaattattatcacaccttatcattaccttcaacttcaataac 5943537  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgatacc 150  Q
    || | |||| | ||||||||||||||||||||||||||||||||||||||    
T  5943536 tttcgtcactacgacttcattataattcaaggttttattctctcgatacc 5943487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 57 - 250
Target Start/End: Complemental strand, 13926476 - 13926286
Alignment:
Q  57 taaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataa-ttcaaggttttattctctcgataccggtca 155  Q
    ||||||||||| | || ||  || ||||||| ||||||   ||||| |||| | ||||||||||||||| || ||||  |||||||| ||||| |||||     
T  13926476 taaagttattaccccatcttatcgttacttttgacttcagcaactttcctcgctaagacttcattataattttaaggagttattctcacgatatcggtcg 13926377  T
Q  156 ttattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttctaattgattcacatcttattcatc 250  Q
    ||||  ||||| ||||| ||||||||||||||||||||| |   |||||||| |||    || |||||||||||||||||| | |||||||||||    
T  13926376 ttatatttatcgtcaaatattataactattacctcttatcttacttcctatttatc----ttgctctcttctaattgattcccgtcttattcatc 13926286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 14054649 - 14054601
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||||    
T  14054649 acttcattataattcgaggtttcattctcttgataccggtcattattat 14054601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 17791357 - 17791537
Alignment:
Q  33 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaagg 132  Q
    |||||||| ||| | |||||||| ||||||| ||||| |||||  |||||| ||||||||||   ||||| |||  | ||||||  |||| |||||||||    
T  17791357 cctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaattcaagg 17791456  T
Q  133 ttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
     || ||||  |||||||  ||| ||||||||||| ||||   |||||||||||| |||| ||   || |||||||||||||    
T  17791457 gttcattccttcgatactagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatctt 17791537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 213
Target Start/End: Original strand, 19099797 - 19099977
Alignment:
Q  33 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaagg 132  Q
    |||||||| ||| | |||||||| ||||||| ||||| |||||  |||||| ||||||||||   ||||| |||  | ||||||  |||| |||||||||    
T  19099797 cctaatcttaactttgttctaatttaaagttgttatctcaccttatcattagtttcgacttcagcaactttcctagctaagactatattacaattcaagg 19099896  T
Q  133 ttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
     || ||||  |||||||  ||| ||||||||||| ||||   |||||||||||| |||| ||   || |||||||||||||    
T  19099897 gttcattccttcgatactagtcgttattattatcgtcaatcgttataactattatctctcatcctctctcctattcatctt 19099977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 16642814 - 16642913
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||  || |||   |||| ||||| ||||||||||   ||||||||| ||||||    
T  16642814 acttcattataattcgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcctatgcatctt 16642913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 4712398 - 4712350
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| |||| || |||||||||| |||||||    
T  4712398 acttcattataattcgaggtttcattcacttgataccggtcgttattat 4712350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 19547012 - 19546767
Alignment:
Q  9 cgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctca 108  Q
    |||||| ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||| |  ||||||||||||||||| |||||||||||||    
T  19547012 cgtcatctatacgtaaaccattctcctaatctgaacctcgttctaatttaaagttattatcgcacttaatcattactttcgacttcataaacttccctca 19546913  T
Q  109 ccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat----ttgctttcct 204  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    || |||||||    
T  19546912 ccaagacttcattataattcaaggtttcattctctcgataccagtcattattattatcgtcaaacattataactattacctcttatctgctttctttcct 19546813  T
Q  205 attcatcttaatttctctcttctaattgattcacatcttattcatc 250  Q
    |||||||||||||  ||||||||||| ||||| ||||||| |||||    
T  19546812 attcatcttaattggtctcttctaatcgattctcatcttactcatc 19546767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 7682248 - 7682035
Alignment:
Q  33 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaagg 132  Q
    |||||||| |||  ||||||||| |||||||| |||   ||||  |||||| ||| ||||||   ||||| |||||| |||||| |||||||||||||||    
T  7682248 cctaatcttaactccgttctaatttaaagttactatgttaccttatcattaattttgacttcaacaactttcctcactaagactacattataattcaagg 7682149  T
Q  133 ttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttctaattg 232  Q
    |||||||||||||||||  ||||||||||||| | ||||  |||||||||||||||||||||   |||||||||||||||||    |||||||||||| |    
T  7682148 ttttattctctcgatactagtcattattattaacgtcaatcattataactattacctcttatcctctttcctattcatctta----ctctcttctaatcg 7682053  T
Q  233 attcacatcttattcatc 250  Q
    || | ||| |||||||||    
T  7682052 atccccattttattcatc 7682035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 8403470 - 8403258
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| ||||||||||||| ||| |  ||| |||||| ||||||  ||||    
T  8403470 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaagttattatctcactttatcagtacttttgacttcagaaac 8403371  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||| |||||| |||||||||| ||||||||||| |||||||||  |||| |||||  ||||| ||||||||||||||| |||||  ||||    
T  8403370 tttcctcactaaggcttcatcataattcaagattttattctcttgataccggttgttatcattattgtcaaacattataactattaccgcttatccgctt 8403271  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  8403270 tcctactcatctt 8403258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 9191571 - 9191686
Alignment:
Q  98 aacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttg 197  Q
    ||||| |||||| | |||||| ||||||||||||||||| ||||||||||||||||  ||||||| |||  | ||  ||||||||| || |||||||       
T  9191571 aactttcctcactacgacttcgttataattcaaggttttgttctctcgataccggttgttattatcatcgactaaccttataactaatatctcttatcct 9191670  T
Q  198 ctttcctattcatctt 213  Q
    ||||||||||||||||    
T  9191671 ctttcctattcatctt 9191686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 10906303 - 10906195
Alignment:
Q  105 ctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcct 204  Q
    ||||| |||||| |||| ||||||||||||||||||||||||||| | || ||||||| ||| || ||  ||||||||| || |||||||   |||||||    
T  10906303 ctcactaagactccattttaattcaaggttttattctctcgatactgatcgttattatcatcgtctaaccttataactaatatctcttatcctctttcct 10906204  T
Q  205 attcatctt 213  Q
    ||| |||||    
T  10906203 attaatctt 10906195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 14970565 - 14970698
Alignment:
Q  50 tctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaaggttttattctctcgatac 149  Q
    |||||| || |||||||||| ||||   |||||| ||| ||||||   ||||| |||||| | |||| |||||||||||| || |||||||||| || |     
T  14970565 tctaatttagagttattatctcaccctatcattaattttgacttcaacaactttcctcactacgactccattataattcatggctttattctcttgacat 14970664  T
Q  150 cggtcattattattatcatcaaagattataacta 183  Q
    ||||||||||||| ||| || ||  |||||||||    
T  14970665 cggtcattattatcatcgtctaaccttataacta 14970698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 14979861 - 14979813
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| |||| || |||||||||| |||||||    
T  14979861 acttcattataattcgaggtttcattcacttgataccggtcgttattat 14979813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 14988973 - 14988925
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| ||||||| |||||| ||| |||||||    
T  14988973 acttcattataattcgaggtttcattctcttgataccagtcgttattat 14988925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 18556596 - 18556343
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    ||||| ||| |||| ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||| |  ||||||||||||||||| |||||    
T  18556596 acattgatcttcatctatacgtaaaccattctcctaatctgaacctcgttctaatttaaagttattatcgcactttatcattactttcgacttcataaac 18556497  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat----tt 196  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||    ||    
T  18556496 ttccctcaccaagacttcattataattcaaggtttcattctctcgataccagtcattattattatcgtcaaacattataactattacctcttatctgctt 18556397  T
Q  197 gctttcctattcatcttaatttctctcttctaattgattcacatcttattcatc 250  Q
     ||||||||||||||||||||  ||||||||||| ||||| ||||||| |||||    
T  18556396 tctttcctattcatcttaattggtctcttctaatcgattcccatcttactcatc 18556343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 11556395 - 11556580
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| || ||||||| ||||||||||||| ||||   |||||| ||||||||||   ||||| |||||| |||||| ||||||||||    
T  11556395 attcccctaatcttaacttcattctaatttaaagttattatctcaccatatcattaatttcgacttcagcaactttcctcactaagactacattataatt 11556494  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    |||||||| |||||||| ||||  ||| ||||||||||| ||||  ||||||| |||||||||||||   ||||||||||||||||    
T  11556495 caaggtttcattctctcaatactagtcgttattattatcgtcaaccattataattattacctcttatcctctttcctattcatctt 11556580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15872526 - 15872314
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||||||||||||| ||| |  | ||||| ||||||||||||| ||     ||| |||||| ||  ||  ||||    
T  15872526 acattcgtcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgatatcagaaac 15872427  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||| ||||||||||||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||||||||||| | ||||| |||||    
T  15872426 tttcctcactaaggcttcattataattcaagattttattctctcgatgccggttgttattattatcgtcaaacattataactattatcgcttatctgctt 15872327  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  15872326 tcctactcatctt 15872314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15890118 - 15889906
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || |||||| ||||||||| ||| |  | ||||| ||||||||||||| ||     ||| |||||| ||| ||  ||||    
T  15890118 acattcgtcgtcatctatacatcgactattttcctaatcttaacttaatcctaatttaaagttattatctcattctatcagtacttttgacatcagaaac 15890019  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||| ||| ||||||||||||||||| ||||||||||||||| |||||  ||||||||||||||||| ||||||||||||| | |||||  | ||    
T  15890018 tttcctcactaaggcttcattataattcaagattttattctctcgatgccggttgttattattatcatcaaacattataactattatcgcttatccggtt 15889919  T
Q  201 tcctattcatctt 213  Q
    ||||| |||||||    
T  15889918 tcctactcatctt 15889906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 11098043 - 11097857
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcat-tataat 126  Q
    |||| |||||||| ||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||||  |||||| |||||| |||||| ||  ||||||    
T  11098043 attcccctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaattttgacttcagaaactttcctcactaagactacaaatataat 11097944  T
Q  127 tcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    ||||||||| |||||||||||||  ||| ||||| ||||| | ||  ||||||| |||||||||||||   ||||||||||||||||    
T  11097943 tcaaggtttcattctctcgatactagtcgttattgttatcgtaaaccattataattattacctcttatcctctttcctattcatctt 11097857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 12229341 - 12229546
Alignment:
Q  8 tcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctc 107  Q
    ||||||| ||||| || |||||||||||||||| ||| |  | ||||| | ||||||||||| ||| |  ||| |||||||| ||||  |||||| | ||    
T  12229341 tcgtcatctatacatcgactattctcctaatcttaacttaatcctaatttgaagttattatctcactttatcagtactttcggcttcagaaactttcttc 12229440  T
Q  108 accaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctatt 207  Q
    || ||||||||| ||||||||||| ||||||| | || ||||||||  ||||||||||| ||||| ||||||||||||||| |||||   |||||||| |    
T  12229441 actaagacttcagtataattcaagattttattttttcaataccggttgttattattatcgtcaaacattataactattaccgcttatcctctttcctact 12229540  T
Q  208 catctt 213  Q
    ||||||    
T  12229541 catctt 12229546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 192
Target Start/End: Complemental strand, 18220443 - 18220279
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| || ||||||| ||||||||||||| |||||  |||||| ||||||||||   |||||  ||||| |||||| ||||||||||    
T  18220443 attcccctaatcttaacttcattctaatataaagttattatctcaccttatcattaatttcgacttcaacaacttttctcactaagactacattataatt 18220344  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctctt 192  Q
    |||||||| |||||||||||||  ||| ||||||||||   |||  |||||||||||||||||||    
T  18220343 caaggtttcattctctcgatactagtcgttattattattgacaaccattataactattacctctt 18220279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 214
Target Start/End: Complemental strand, 30275693 - 30275514
Alignment:
Q  35 taatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaaggtt 134  Q
    |||||| ||| || ||||||| ||||||||||||  |||||  |||||||||||||| || | ||||| || ||| || ||||||||||| || | ||||    
T  30275693 taatcttaacttcattctaatttaaagttattatttcaccttatcattactttcgacgtcatcaactttcc-cactaaaacttcattatattttagggtt 30275595  T
Q  135 ttattctctcgataccggtcattattattatcatcaaagattata-actattacctcttatttgctttcctattcatctta 214  Q
    ||| | ||||| |||| ||| ||||||||||| ||||| |||||| ||||||| ||||||| | ||||  |||||||||||    
T  30275594 ttaatatctcgttaccagtcgttattattatcgtcaaacattatatactattatctcttatcttcttttttattcatctta 30275514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 16284682 - 16284496
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataa-t 126  Q
    ||||||||||  | ||| || ||||| | ||||||||||||| || ||  || |||||||| |||||   ||||| |||||| || |||||||||||| |    
T  16284682 attctcctaactttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataatt 16284583  T
Q  127 tcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    | ||||  |||||||||||||| | ||| ||||  |||||| |||| ||||||| | |||| |||||| |  |||||||| ||||||    
T  16284582 ttaaggagttattctctcgatatcagtcgttatatttatcaacaaacattataaattttacgtcttatcttatttcctatacatctt 16284496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 4382 - 4127
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    ||||| |||||||| ||||||| ||| ||||||||||| | |||||| ||||||| ||||||||||||||||| |  ||||||||||||||||| |||||    
T  4382 acattgatcgtcatctatacgtaaaccattctcctaatttgaacctcattctaatttaaagttattatcgcacttgatcattactttcgacttcataaac 4283  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat----tt 196  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||| ||||| |||||||||| |||||||| |    ||    
T  4282 ttccctcaccaagacttcattataattcaaggtttcattctctcgatactagtcattattattatcgtcaaacattataactactacctcttctcttctt 4183  T
Q  197 gctttcctattcatcttaatttctctcttctaattgattcacatcttattcatctc 252  Q
     |||||||||||||||||||| |||||||||||| ||||  |||||||||||||||    
T  4182 tctttcctattcatcttaattgctctcttctaatcgattgccatcttattcatctc 4127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 110 - 224
Target Start/End: Complemental strand, 13763 - 13649
Alignment:
Q  110 caagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattca 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||    
T  13763 caagacttcattataattcaaggttttattctctcgataccggtcattattattatcgccaaagattataactattacctcttatttgcttttctattca 13664  T
Q  210 tcttaatttctctct 224  Q
    |||||||||||||||    
T  13663 tcttaatttctctct 13649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 13937394 - 13937578
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    ||||| ||||||| ||| || ||||||| ||||||||||||| |||||  |||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  13937394 attcttctaatcttaacttcattctaatttaaagttattatctcaccttatcattactttcgacttcgaaaacttccctcactaagacttcattataatt 13937493  T
Q  128 caaggttttattctctcg-ataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatc 211  Q
    ||||||||||||  |||| ||| ||||| ||||||||||||||||| | ||||||||||||||||||    ||||||||||||||    
T  13937494 caaggttttatttcctcgaatatcggtcgttattattatcatcaaatagtataactattacctcttaccctctttcctattcatc 13937578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 24831668 - 24831455
Alignment:
Q  33 cctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaagg 132  Q
    |||||||| |||  ||||||||| |||||||| |||| |||||  |||||| ||| ||||||   ||||| | |||| |||||| |||||||||||||||    
T  24831668 cctaatcttaactccgttctaatttaaagttactatctcaccttatcattaattttgacttcaacaactttcttcactaagactacattataattcaagg 24831569  T
Q  133 ttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttctaattg 232  Q
    |||||||||||||||||  ||||||||||||||  ||||  |||||||||||||||||||||   |||||||||||||||||    |||||||||||| |    
T  24831568 ttttattctctcgatactagtcattattattattgtcaaccattataactattacctcttatcctctttcctattcatctta----ctctcttctaatcg 24831473  T
Q  233 attcacatcttattcatc 250  Q
    || | ||| |||||||||    
T  24831472 atccccattttattcatc 24831455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 24759211 - 24759423
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| | ||||| ||||| || || ||| ||||||  | |||||| ||||| | ||||||||||||| || ||  || ||||||||||||||   |||    
T  24759211 acattcgtagtcatctatacatcgaccattatcctaactttaacctcattctattttaaagttattatctcatcttatcgttactttcgacttcagcaac 24759310  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||  ||||||||||||||||| ||||  ||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||||||||| | | |    
T  24759311 tttcctcagtaagacttcattataatttaaggagttattctctcgatacaggtcgttaatattatcgtcaaaaattataactattacctcttatcttcct 24759410  T
Q  201 tcctattcatctt 213  Q
    |||||||||||||    
T  24759411 tcctattcatctt 24759423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 23960539 - 23960375
Alignment:
Q  49 ttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataattcaaggttttattctctcgata 148  Q
    ||||||| ||||||||||||| |||||   ||||||||| ||| ||   ||||| |||| |||| ||| |||||||| | ||||| ||||| ||||||||    
T  23960539 ttctaatttaaagttattatctcaccttaccattacttttgacgtcagcaactttcctcgccaaaactccattataacttaaggtcttattttctcgata 23960440  T
Q  149 ccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||| | | ||| ||||||||||    
T  23960439 ccggtcgttataattatcatcaaactttataactattacctcttatcttccttcttattcatctt 23960375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 17458485 - 17458561
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctc 190  Q
    |||||||||||||| |||   |||||||||||||| || || ||||||||||  ||||| ||||||| |||||||||    
T  17458485 acttcattataatttaagaagttattctctcgatatcgatcgttattattattgtcaaatattataattattacctc 17458561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 1544 - 1680
Alignment:
Q  78 tcattactttcgacttcctaaacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagatta 177  Q
    |||||| ||||||||||   ||||| ||||||||||||| |||||||||||||||||| | |||||||||||  ||| ||||||||||| ||||  ||||    
T  1544 tcattaatttcgacttcaacaactttcctcaccaagactacattataattcaaggtttcaatctctcgatactagtcgttattattatcgtcaaccatta 1643  T
Q  178 taactattacctcttatttgctttcctattcatctta 214  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1644 taactattacctcttattctctttcctattcatctta 1680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 1705 - 1917
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| | ||||| ||||| || || ||| ||||||  | |||||| ||||| | ||||||||||||| || ||  || ||||||||||||||   |||    
T  1705 acattcgtagtcatctatacatcgaccattatcctaactttaacctcattctattttaaagttattatctcatcttatcgttactttcgacttcagcaac 1804  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctt 200  Q
    || |||||  ||||||||||||||||| ||||  ||||||||||||||| |||| ||| ||||||| ||||| ||||||||||||||||||||| | | |    
T  1805 tttcctcagtaagacttcattataatttaaggagttattctctcgatacaggtcgttaatattatcgtcaaaaattataactattacctcttatcttcct 1904  T
Q  201 tcctattcatctt 213  Q
    |||||||||||||    
T  1905 tcctattcatctt 1917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 189
Target Start/End: Complemental strand, 3316 - 3155
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| |||||||||| ||||||||||||| |||||  ||||||  || ||||||   ||||| |||||   |||||||| |||||||    
T  3316 attcccctaatcttaacttcgttctaatttaaagttattatctcaccttatcattaaattagacttcaacaactttcctcattgagacttcactataatt 3217  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacct 189  Q
    |||||||| ||||||| |||||| ||||||||||||||| ||||  ||||||||||||||||    
T  3216 caaggtttcattctcttgataccagtcattattattatcgtcaaccattataactattacct 3155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 13477310 - 13477125
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| |||||||||  |||| |||||||| |||||  |||||| ||| ||||||   ||||| |||||| |||||| ||||||||||    
T  13477310 attcccctaatcttaacttcgttctaaattaaacttattatctcaccttatcattaatttggacttcagcaactttcctcactaagactacattataatt 13477211  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
     ||||||| |||||||||||||  ||||||||||||||  ||||  ||||||||||||| ||||| |   ||||||||||||||||    
T  13477210 taaggtttcattctctcgatactagtcattattattattgtcaaccattataactattatctcttgtcctctttcctattcatctt 13477125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 37945497 - 37945357
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||||||||||| |||||| |||  ||||||||||||| ||| |  ||||||  ||||||||||||| |||||  ||||||||||| |||||   |||    
T  37945497 acattcatcgtcatctatacgccaatcattctcctaatcttaacttgattctaaattaaagttattatctcaccttttcattactttcaacttcagcaac 37945398  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattct 141  Q
    || |||||| ||||||||||||||||||||| |||||||||    
T  37945397 tttcctcactaagacttcattataattcaagattttattct 37945357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 213
Target Start/End: Complemental strand, 22614683 - 22614568
Alignment:
Q  98 aacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttg 197  Q
    ||||| |||||| |||||| |||||||||||||||||| |||||||||||||  ||| ||||||||||| | ||  |||||||||||||||||||||       
T  22614683 aactttcctcactaagactacattataattcaaggtttcattctctcgatactagtctttattattatcgttaaccattataactattacctcttatcct 22614584  T
Q  198 ctttcctattcatctt 213  Q
    ||||||||||||||||    
T  22614583 ctttcctattcatctt 22614568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 247
Target Start/End: Original strand, 20026451 - 20026666
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| || ||||||| || |||||||||| ||||   |||||| ||||||||||   ||||| |||||| | |||| |||| |||||    
T  20026451 attcccctaatcttaacttcattctaatttagagttattatctcaccctatcattaatttcgacttcaacaactttcctcactacgactccattctaatt 20026550  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttct 227  Q
     ||||||||||||||||||||| |||||||||||| ||| || ||  ||||||||| ||  |||||| | |||||||| | ||     |||||||||| |    
T  20026551 aaaggttttattctctcgatactggtcattattatcatcgtctaaccttataactaatatttcttatcttctttcctactaat----ttttctctctttt 20026646  T
Q  228 aattgattcacatcttattc 247  Q
    ||| ||||||||||||||||    
T  20026647 aatagattcacatcttattc 20026666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 194
Target Start/End: Complemental strand, 4531419 - 4531253
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||||||| ||| |||||||||| ||||||||||||| |||||  |||||   |||||||||   | ||| || ||   |||||||| |||||||    
T  4531419 attcacctaatcttaacttcgttctaatttaaagttattatctcaccttatcattgaattcgacttcaacagctttccccaatgagacttcactataatt 4531320  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat 194  Q
    | ||||||  |||||||||||| | || ||||||||||| ||||  || ||||||||||||| ||||    
T  4531319 cgaggtttccttctctcgatactgatcgttattattatcgtcaaccatcataactattaccttttat 4531253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 11655650 - 11655759
Alignment:
Q  98 aacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttg 197  Q
    ||||| |||||| || ||| |||||||||||||||||| ||||| |||||||  ||| ||||||||||       |  |||||||||||||||||||       
T  11655650 aactttcctcactaatactacattataattcaaggtttcattctgtcgatactagtctttattattat------tgtatataactattacctcttatcct 11655743  T
Q  198 ctttcctattcatctt 213  Q
    ||||||||||||||||    
T  11655744 ctttcctattcatctt 11655759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 48377331 - 48377379
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| ||||||| |||| ||||| |||||||    
T  48377331 acttcattataattcgaggtttcattctcttgatatcggtcgttattat 48377379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10535 - 10740
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttc-taatctaaagttattatcgcacctcgtcattactttcgacttcctaaa 99  Q
    |||||| ||||||| ||||| || |||||||||||||||| |||||   || |||| ||||| ||||||| ||| |   |||||||||  |||||  |||    
T  10535 acattcgtcgtcatctatacatcgactattctcctaatcttaaccttaatcctaatttaaagctattatctcactttaccattacttttaacttcagaaa 10634  T
Q  100 cttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgct 199  Q
    ||| |||||| ||  ||||||||||||||||| |||||||||||| ||| | ||  ||||||||||| ||||| ||||||||||||||| |||||  |||    
T  10635 ctttcctcactaatgcttcattataattcaagattttattctctcaatatctgttgttattattatcgtcaaacattataactattaccgcttatccgct 10734  T
Q  200 ttccta 205  Q
    ||||||    
T  10735 ttccta 10740  T

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Target: scaffold0385 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 14661 - 14848
Alignment:
Q  1 acattcatcgtcatttatacgtcaactattctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaac 100  Q
    |||||| ||||||| ||||| || ||| |||||||||||| ||| |  | ||||| |||| |||||||| ||| |  ||| |||||| ||||||  |||     
T  14661 acattcgtcgtcatctatacatcgacttttctcctaatcttaacttaatcctaatttaaatttattatctcactttatcaatacttttgacttcagaaaa 14760  T
Q  101 ttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacc 188  Q
    || |||||| ||| |||| |||||||||||| ||||||||||||| |||| ||  ||||||||||| ||||| |||||||||||||||    
T  14761 tttcctcactaaggcttctttataattcaagattttattctctcgttaccagttgttattattatcgtcaaacattataactattacc 14848  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 194
Target Start/End: Original strand, 29294331 - 29294497
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    |||| |||| ||| ||| |||| ||||| ||||||||||||| |||||  | ||||  || ||||||   ||||| ||||||  |||||||| |||||||    
T  29294331 attcccctactcttaacttcgtcctaatttaaagttattatctcaccttataattaaatttgacttcagcaactttcctcactgagacttcactataatt 29294430  T
Q  128 caaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttat 194  Q
      |||||| |||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||    
T  29294431 tgaggtttcattctctcgataccggtcgttattattatcgtcaatcattataactattacctcttat 29294497  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 23659051 - 23659100
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattatt 163  Q
    ||||||||||||||| |||||| ||||||| |||| ||||| ||||||||    
T  23659051 acttcattataattcgaggtttcattctcttgatatcggtcgttattatt 23659100  T

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Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 52635 - 52699
Alignment:
Q  98 aacttccctcaccaagacttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||| |||||| |||||| |||||||||| |||||||||||||||||||||||||  |||||||    
T  52635 aactttcctcactaagactccattataatttaaggttttattctctcgataccggttgttattat 52699  T

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Target: scaffold0048; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 87187 - 87134
Alignment:
Q  98 aacttccctcaccaagacttcattataattcaaggttttattctctcgataccg 151  Q
    ||||| |||| | |||||| |||||||||| |||||||||||||||||||||||    
T  87187 aactttcctctctaagactccattataatttaaggttttattctctcgataccg 87134  T

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Target: scaffold0145 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 250
Target Start/End: Original strand, 13035 - 13254
Alignment:
Q  28 attctcctaatctaaacctcgttctaatctaaagttattatcgcacctcgtcattactttcgacttcctaaacttccctcaccaagacttcattataatt 127  Q
    ||||||||||  | ||| || ||||| | ||||||||||||| || ||  || |||||||| |||||   ||||| |||||| || ||||||||||||||    
T  13035 attctcctaactttaacttcattctattttaaagttattatctcatcttatcgttactttcaacttcaacaactttcctcactaaaacttcattataatt 13134  T
Q  128 c-aaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatcttaatttctctcttc 226  Q
      ||||  |||||||||||||| | ||| ||||  ||||||||||| ||||||| | |||| |||||| |  |||||||| ||||||     ||||||||    
T  13135 ttaaggagttattctctcgatatcagtcgttatatttatcatcaaacattataaatgttacgtcttatcttatttcctatacatcttg----ctctcttc 13230  T
Q  227 taattgattcacatcttattcatc 250  Q
    |||| ||| |  ||||||||||||    
T  13231 taatggatcccaatcttattcatc 13254  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 13881855 - 13881756
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||  || |||   |||| ||||| ||||||||||   ||||||||| ||||||    
T  13881855 acttcattataattcgaggtttcattctcttgataccggtcgttattatattcgtcactcattacaactactacctcttatcctctttcctatgcatctt 13881756  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 213
Target Start/End: Complemental strand, 51626591 - 51626492
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattattatcatcaaagattataactattacctcttatttgctttcctattcatctt 213  Q
    ||||||||||||||| |||||| ||||| | ||||||| || |||||||  || |||   |||| ||||||||||||||||   ||||||||| ||||||    
T  51626591 acttcattataattcgaggtttcattcttttgataccgttcgttattatattcgtcactcattacaactattacctcttatcctctttcctatgcatctt 51626492  T

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Target: scaffold0091 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 29575 - 29623
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||||| ||||||| |||||||||| |||||||    
T  29575 acttcattataattcgaggtttcattctcttgataccggtcgttattat 29623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 494 - 542
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| |||| | ||||||| |||||||||| |||||||    
T  494 acttcattataattcgaggtctcattctcttgataccggtcgttattat 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 13168 - 13120
Alignment:
Q  114 acttcattataattcaaggttttattctctcgataccggtcattattat 162  Q
    ||||||||||||||| ||||||| |||||| ||||| |||| |||||||    
T  13168 acttcattataattcgaggtttttttctcttgatactggtcgttattat 13120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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