View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0678_low_57 (Length: 237)

Name: NF0678_low_57
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0678_low_57
NF0678_low_57
[»] chr1 (3 HSPs)
chr1 (1-141)||(27044876-27045018)
chr1 (3-141)||(21786538-21786677)
chr1 (1-45)||(22627215-22627259)
[»] chr6 (4 HSPs)
chr6 (1-141)||(22063590-22063733)
chr6 (60-141)||(25966153-25966235)
chr6 (1-45)||(23520252-23520296)
chr6 (80-140)||(23520340-23520400)
[»] chr4 (6 HSPs)
chr4 (1-141)||(15349923-15350066)
chr4 (1-141)||(14687865-14688006)
chr4 (1-45)||(11498691-11498735)
chr4 (1-45)||(18290126-18290170)
chr4 (1-45)||(10628739-10628783)
chr4 (1-45)||(45241046-45241090)
[»] chr8 (5 HSPs)
chr8 (1-141)||(20000290-20000432)
chr8 (59-141)||(45562723-45562805)
chr8 (59-141)||(8213-8294)
chr8 (1-44)||(45562664-45562707)
chr8 (1-42)||(17618732-17618773)
[»] chr3 (2 HSPs)
chr3 (1-141)||(6812853-6812997)
chr3 (1-141)||(3247171-3247312)
[»] chr7 (10 HSPs)
chr7 (59-141)||(542115-542197)
chr7 (59-141)||(14223760-14223842)
chr7 (1-141)||(13633625-13633765)
chr7 (1-141)||(13740305-13740445)
chr7 (84-141)||(16327869-16327926)
chr7 (1-45)||(12565092-12565136)
chr7 (83-141)||(4310615-4310673)
chr7 (1-44)||(14223699-14223742)
chr7 (1-44)||(542051-542097)
chr7 (17-45)||(8784289-8784317)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-141)||(17823-17964)
[»] chr2 (4 HSPs)
chr2 (1-141)||(25361343-25361484)
chr2 (61-141)||(44998223-44998303)
chr2 (95-141)||(26922028-26922074)
chr2 (1-45)||(44998320-44998364)
[»] scaffold0566 (2 HSPs)
scaffold0566 (59-141)||(584-666)
scaffold0566 (1-43)||(691-733)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-141)||(52626-52768)
[»] chr5 (2 HSPs)
chr5 (1-40)||(18488159-18488198)
chr5 (1-45)||(23602818-23602862)
[»] scaffold0012 (2 HSPs)
scaffold0012 (1-45)||(9515-9559)
scaffold0012 (1-45)||(13618-13662)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27045018 - 27044876
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn--gggttagggttaaatagtgtagaatttggtgtttgaatgg 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||||||||||||    
T  27045018 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaattttttttggtttttgggttagggttaaatagtgtagaatttggtgtttgaatgg 27044919  T
Q  99 ctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
     ||| ||||||||||||||||||||||||||||||||||||||    
T  27044918 atgattgttggttttgattggtggtaaatgtttggaatgatga 27044876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 21786538 - 21786677
Alignment:
Q  3 ttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn--gggttagggttaaatagtgtagaatttggtgtttgaatggct 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||               |||||||| |||| | ||||||||||||||||||| |||| |    
T  21786538 ttaagtgaggttgatgagtttaatgatggggattggtgaagaattttttttggtttttgggttaggtttaa-tggtgtagaatttggtgtttggatggat 21786636  T
Q  101 gaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  21786637 gaatgttggttttgattggtagtaaatgtttggaatgatga 21786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 22627215 - 22627259
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||    
T  22627215 gtttaagtgaggtttatgagttgaatggtggagattggtgaagaa 22627259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 22063590 - 22063733
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn---gggttagggttaaatagtgtagaatttggtgtttgaatg 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||    
T  22063590 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaatttttttttggtttttgggttagggttaaatagtgtagaatttggtgtttgaatg 22063689  T
Q  98 gctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    | ||| ||||||||||||||||||||||||||||||||||||||    
T  22063690 gatgattgttggttttgattggtggtaaatgtttggaatgatga 22063733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 141
Target Start/End: Complemental strand, 25966235 - 25966153
Alignment:
Q  60 ggttagggttaaatagtgta-gaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||| |||| ||| ||||| |||||||||||||| |||| |||| |||| ||||||||| ||||  ||||||||||||||||    
T  25966235 ggttatggtttaatggtgtacgaatttggtgtttggatggatgaaagttgattttgattgatggtttatgtttggaatgatga 25966153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23520252 - 23520296
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||||||| ||||| ||||||||||||    
T  23520252 gtttaagtgaggtttatgagtttaatcatggatattggtgaagaa 23520296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 23520340 - 23520400
Alignment:
Q  80 gaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatg 140  Q
    |||||||| ||||| |||| ||||||||||||||||| | ||||  |||||||||||||||    
T  23520340 gaatttggggtttggatggatgaatgttggttttgatggttggtttatgtttggaatgatg 23520400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 15349923 - 15350066
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn---gggttagggttaaatagtgtagaatttggtgtttgaatg 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||    
T  15349923 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaatttttttttggtttttgggttagggttaaatagtgtagaatttggtgtttgaatg 15350022  T
Q  98 gctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    | ||| ||||||||||||||||||||||||||||||||||||||    
T  15350023 gatgattgttggttttgattggtggtaaatgtttggaatgatga 15350066  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 14687865 - 14688006
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn-gggttagggttaaatagtgtagaatttggtgtttgaatggc 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||              ||||||||||| ||| ||||||||||||||||||| ||||     
T  14687865 gtttaagtgaggttgatgagtttaatgatggagattagtgaagaatttttttggtttttgggttagggtttaatggtgtagaatttggtgtttggatgga 14687964  T
Q  100 tgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  14687965 tgaatgttggttttaattggtggtaaatgtttggaatgatga 14688006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11498691 - 11498735
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11498691 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 11498735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18290170 - 18290126
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    ||||||||||| || | ||||||||||||||||||||||||||||    
T  18290170 gtttaagtgagattaacgagtttaatgatggagattggtgaagaa 18290126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10628783 - 10628739
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||||    
T  10628783 gttttagtgaggtttatgagttgaatggtggagattggtgaagaa 10628739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45241046 - 45241090
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||| ||| | ||||||||||||||||    
T  45241046 gtttaagtgaggtttatgagttgaataacggagattggtgaagaa 45241090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 20000432 - 20000290
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn--gggttagggttaaatagtgtagaatttggtgtttgaatgg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||| ||||||||||||||||||||||||    
T  20000432 gtttaagtgaggttgatgagtttaatgatggagattggtgaagatttttttttgatttttgggttagggttaaatggtgtagaatttggtgtttgaatgg 20000333  T
Q  99 ctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  20000332 atgaatgttggttttgattggtggtaaatgtttggaatgatga 20000290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 45562723 - 45562805
Alignment:
Q  59 gggttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||| ||| ||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||||||||||||    
T  45562723 gggttagggtttaatggtgtagaatttggtgtttggatggatgaaagttggttttgattggtggttaatgtttggaatgatga 45562805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 8213 - 8294
Alignment:
Q  59 gggttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||| ||| ||||||||||||||||||| |||| |||| ||| ||||||||||||||| |||||||||||||||||    
T  8213 gggttagggtttaatggtgtagaatttggtgtttggatggatgaaagtt-gttttgattggtggttaatgtttggaatgatga 8294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45562664 - 45562707
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaaga 44  Q
    |||||||||||||| ||||||| |||||||||||||||||||||    
T  45562664 gtttaagtgaggtttatgagttgaatgatggagattggtgaaga 45562707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17618773 - 17618732
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaa 42  Q
    |||||||||||||| ||||||| |||| ||||||||||||||    
T  17618773 gtttaagtgaggtttatgagttgaatggtggagattggtgaa 17618732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 6812997 - 6812853
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn----gggttagggttaaatagtgtagaatttggtgtttgaat 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||    
T  6812997 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaattttttttttggtttttgggttagggttaaatagtgtagaatttggtgtttgaat 6812898  T
Q  97 ggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    || ||| ||||||||||||||||||||||||||||||||||||||    
T  6812897 ggatgattgttggttttgattggtggtaaatgtttggaatgatga 6812853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 3247171 - 3247312
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn-gggttagggttaaatagtgtagaatttggtgtttgaatggc 99  Q
    |||||||||||||| ||||||||||||||||||||||||||||||              ||||||||||| ||| ||||||||||||||||||| ||||     
T  3247171 gtttaagtgaggtttatgagtttaatgatggagattggtgaagaatctttttggtttttgggttagggtttaatggtgtagaatttggtgtttggatgga 3247270  T
Q  100 tgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    |||||||||||| ||||||||| | |||||||||||||||||    
T  3247271 tgaatgttggttgtgattggtgtttaatgtttggaatgatga 3247312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 542115 - 542197
Alignment:
Q  59 gggttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  542115 gggttagggttaaatagtgtagaatttggtgtttgaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 542197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 14223760 - 14223842
Alignment:
Q  59 gggttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14223760 gggttagggttaaatggtgtagaatttggtgtttaaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 14223842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13633765 - 13633625
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnngggttagggttaaatagtgtagaatttggtgtttgaatggct 100  Q
    ||||||||||| || ||||||| ||||||||||||||||||||||             |||||||| || ||| ||||||||||||||||||| |||| |    
T  13633765 gtttaagtgagttttatgagttgaatgatggagattggtgaagaattttttggtttttgggttaggttttaatggtgtagaatttggtgtttggatggat 13633666  T
Q  101 gaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  13633665 gaatgttggttttgattggtggttaatgtttggaatgatga 13633625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13740445 - 13740305
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnngggttagggttaaatagtgtagaatttggtgtttgaatggct 100  Q
    ||||||||||| || ||||||| ||||||||||||||||||||||             |||||||| || ||| ||||||||||||||||||| |||| |    
T  13740445 gtttaagtgagttttatgagttgaatgatggagattggtgaagaattttttggtttttgggttaggttttaatggtgtagaatttggtgtttggatggat 13740346  T
Q  101 gaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  13740345 gaatgttggttttgattggtggttaatgtttggaatgatga 13740305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 16327869 - 16327926
Alignment:
Q  84 ttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16327869 ttggtgtttgaatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 16327926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12565136 - 12565092
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  12565136 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 12565092  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 4310673 - 4310615
Alignment:
Q  83 tttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||| |||| ||||||||||||||||||||||||  ||||||||||||||||    
T  4310673 tttggtgtttggatggatgaatgttggttttgattggtggtttatgtttggaatgatga 4310615  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14223699 - 14223742
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaaga 44  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  14223699 gtttaagcgaggttgatgagtttaatgatggagattggtgaaga 14223742  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 542051 - 542097
Alignment:
Q  1 gtttaagtgaggttgat---gagtttaatgatggagattggtgaaga 44  Q
    |||||||||||||||||   ||||||||||| |||||||||||||||    
T  542051 gtttaagtgaggttgatgatgagtttaatgaaggagattggtgaaga 542097  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 8784289 - 8784317
Alignment:
Q  17 tgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||||||||||||||||||    
T  8784289 tgagtttaatgatggagattggtgaagaa 8784317  T

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Target: scaffold0222 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17964 - 17823
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn-gggttagggttaaatagtgtagaatttggtgtttgaatggc 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||              ||||||||||| ||| ||||| ||||||||||||| ||||     
T  17964 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaatttttttggtttttgggttagggtttaatggtgtacaatttggtgtttggatgga 17865  T
Q  100 tgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  17864 tgaatgttgattttgattggtggtaaatgtttggaatgatga 17823  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 25361484 - 25361343
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnngg-gttagggttaaatagtgtagaatttggtgtttgaatggc 99  Q
    |||||||||||||||||||||||||| ||||||||||||||||||              | ||||||||| ||| ||||||||||||||||||| ||||     
T  25361484 gtttaagtgaggttgatgagtttaataatggagattggtgaagaatttttttggtttttgcgttagggtttaatggtgtagaatttggtgtttggatgga 25361385  T
Q  100 tgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  25361384 tgaatgttggttttgattggtggtaaatgtttggaatgatga 25361343  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 44998303 - 44998223
Alignment:
Q  61 gttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||| ||| ||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| ||||||||    
T  44998303 gttagggtttaatggtgtagaatttggtgtttggatggatgaaagttggttttgattggtggttaatgtttgaaatgatga 44998223  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 26922074 - 26922028
Alignment:
Q  95 atggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  26922074 atggatgaatgttggttttgattggtggtaaatgtttggaatgatga 26922028  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44998364 - 44998320
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||| ||||||| |||||||| |||||    
T  44998364 gtttaagtgaggtttatgagttgaatgatgaagattggtaaagaa 44998320  T

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Target: scaffold0566 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 666 - 584
Alignment:
Q  59 gggttagggttaaatagtgtagaatttggtgtttgaatggctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
    ||||||||||| ||| ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  666 gggttagggtttaatggtgtaaaatttggtgtttggatggatgaatgttggttttgattggtggtaaatgtttggaatgatga 584  T

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Target: scaffold0566; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 733 - 691
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaag 43  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  733 gtttaagtgaggttgatgagtttaatgatggaggttggtgaag 691  T

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Target: scaffold0035 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 52626 - 52768
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaannnnnnnnnnnnn--gggttagggttaaatagtgtagaatttggtgtttgaatgg 98  Q
    |||||||||||||||||||||||||||||||||||||||||| ||               ||||||||| | ||| || |||||||||||||||| ||||    
T  52626 gtttaagtgaggttgatgagtttaatgatggagattggtgaacaattttttttggtttttgggttagggattaatggtttagaatttggtgtttggatgg 52725  T
Q  99 ctgaatgttggttttgattggtggtaaatgtttggaatgatga 141  Q
     ||||||||||||||||||||||||||||| ||||||||||||    
T  52726 atgaatgttggttttgattggtggtaaatggttggaatgatga 52768  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18488159 - 18488198
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtg 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18488159 gtttaagtgaggttgatgagtttaatgatggagattggtg 18488198  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 23602818 - 23602862
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||| ||||||||| ||||||| |||| |||||||||||||||||    
T  23602818 gttttagtgaggtttatgagttgaatggtggagattggtgaagaa 23602862  T

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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9515 - 9559
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||    
T  9515 gtttaagtgaggtttatgagttcaatggtggagattggtgaagaa 9559  T

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Target: scaffold0012; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13618 - 13662
Alignment:
Q  1 gtttaagtgaggttgatgagtttaatgatggagattggtgaagaa 45  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||    
T  13618 gtttaagtgaggtttatgagttcaatggtggagattggtgaagaa 13662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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