View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_6 (Length: 487)
Name: NF0678_low_6
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 70 - 479
Target Start/End: Original strand, 39566049 - 39566459
Alignment:
| Q |
70 |
catcatctaagcacattctgggtccatatgtattaaagatcctagcaattctaacctgaaaaatatacatcacattccataataataagaaatcattaac |
169 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566049 |
catcatctaagcacattctgggtccatatgtattaaagatcctagcaattctaacctgaaaaatatacatcacattccataataataagaaatcattaac |
39566148 |
T |
|
| Q |
170 |
aataattgaatccaattagtaattgatatttagaaagaggttgaaaatgacctctacaccggcccctctgtgataatccatagtcaatgtctcagccgta |
269 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39566149 |
aataattgaatccaattagcaattgatatttagaaagaggttgaaaatgacctctacaccggcccctctgtgataatccatagtcaatgtctcagccgta |
39566248 |
T |
|
| Q |
270 |
cgctttccctcatcgtagcagcttcggacacctgtctcacacaacaacaatttattgccatattctacctaacaacactacatagagacaaggac-aaaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
39566249 |
cgctttccctcatcgtagcagcttcggacacctgtctcacacaacaacaatttattgccaaattctacctaacaacactacatagagacaaggacaaaaa |
39566348 |
T |
|
| Q |
369 |
cactccacttttcttcactttcccaattttaacacctctatataggaccaaattgccctccctccccttcaaccttctataaacataaaccccaatatta |
468 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
39566349 |
aactccacttttcttcactttcccaattttaacacctctatataggaccaaattgccctccctcccattcaaccttctataaacacaaaccccaatatta |
39566448 |
T |
|
| Q |
469 |
ccacctatgat |
479 |
Q |
| |
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||||| ||||| |
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| T |
39566449 |
ccaccaatgat |
39566459 |
T |
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