View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_65 (Length: 204)
Name: NF0678_low_65
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 4580274 - 4580326
Alignment:
| Q |
1 |
ttccatcttgatgtttgatcattttcaggtttaggggatgtgttatattgaag |
53 |
Q |
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| T |
4580274 |
ttccatcttgatgtttgatcattataaggtttaggggatgtgttatattgaag |
4580326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 4580345 - 4580391
Alignment:
| Q |
76 |
aaggaatgttatattgaagtttttgatactgtatttgatattattgg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4580345 |
aaggaatgttatattgaagtttttgatactgtatttgatatttttgg |
4580391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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