View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0678_low_9 (Length: 472)
Name: NF0678_low_9
Description: NF0678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0678_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 30 - 457
Target Start/End: Original strand, 48702202 - 48702629
Alignment:
| Q |
30 |
agagccaagacttggtgacatgtgcacaataaatactctagcgggtatagtagtcattattttataaagttcttgagtgatagcatcatcattggctgaa |
129 |
Q |
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| T |
48702202 |
agagccaagacttggtgacatgtgcacaataaatactctagcgggtatagtagtcattattttataaagttcttgagtgatagcatcatcattggctgaa |
48702301 |
T |
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| Q |
130 |
agagaaattgcacttagatagggaacttgtatataggcttgttgtagaacactagttaaataaggaataagtccttcaccaaaactattgtctacataaa |
229 |
Q |
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| T |
48702302 |
agagaaattgcacttagatagggaacttgtatataggcttgttgtagaacactagttaaataaggaataagtccttcaccaaaactattgtctacataaa |
48702401 |
T |
|
| Q |
230 |
tgggaaccacttgtttccatccaaaagcttggataattgaggtgattgctttagcttgagctgaatcagtttgtgatatttgaaagaagtatgaactttg |
329 |
Q |
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| T |
48702402 |
tgggaaccacttgtttccatccaaaagcttggataattgaggtgattgctttaacttgagttgaatcattttgtgatatttgaaagaagtatgaactttg |
48702501 |
T |
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| Q |
330 |
aagtgatgcaagtgaagggcttgttgctgaaaatgttacaatgggtacgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttatt |
429 |
Q |
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| T |
48702502 |
aagtgatgcaagtgaagggcttgttgctgaaaatgttacaatgggcacgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttatt |
48702601 |
T |
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| Q |
430 |
ggtcccatgatggcatgcacttcctcat |
457 |
Q |
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| T |
48702602 |
ggtcccatgatggcatgcacttcctcat |
48702629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 451
Target Start/End: Original strand, 48714308 - 48714729
Alignment:
| Q |
30 |
agagccaagacttggtgacatgtgcacaataaatactctagcgggtatagtagtcattattttataaagttcttgagtgatagcatcatcattggctgaa |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48714308 |
agagccaagacttggtgacatgtgcacaataaatactctagcgggtatagtagtcattattttataaagttcttgagtgatagcatcatcattggctgaa |
48714407 |
T |
|
| Q |
130 |
agagaaattgcacttagatagggaacttgtatataggcttgttgtagaacactagttaaataaggaataagtccttcaccaaaactattgtctacataaa |
229 |
Q |
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| T |
48714408 |
agagaaattgcacttagatagggaacttgtatataggcttgttgtagaacactagttaaataaggaataagtccttcaccaaaactattgtctacataaa |
48714507 |
T |
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| Q |
230 |
tgggaaccacttgtttccatccaaaagcttggataattgaggtgattgctttagcttgagctgaatcagtttgtgatatttgaaagaagtatgaactttg |
329 |
Q |
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| T |
48714508 |
tgggaaccacttgtttccatccaaaagcttggataattgaggtgattgctttaacttgagttgaatcattttgtgatatttgaaagaagtatgaactttg |
48714607 |
T |
|
| Q |
330 |
aagtgatgcaagtgaagggcttgttgctgaaaatgttacaatgggtacgtgagctttgtctcctagttgaatcacaaaatttgcttccattgttgttatt |
429 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
48714608 |
aagtgatgcaagtgaagggcttgttgctgaaaatgttacaatgggcacgtgagctttgtctcctagttgaatcacgaaatttgtttctattgttgttatt |
48714707 |
T |
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| Q |
430 |
ggtcccatgatggcatgcactt |
451 |
Q |
| |
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|| ||||| ||||| ||||||| |
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| T |
48714708 |
ggccccattatggcttgcactt |
48714729 |
T |
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