View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-11 (Length: 673)
Name: NF0679-INSERTION-11
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-11 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 416
Target Start/End: Complemental strand, 31526008 - 31525593
Alignment:
| Q |
4 |
attcttcaccaaaaacatgcattaatcctagagtatatcgaactaatccacatgtttggatcctctacaaatgttatatggtgtggtacttgtaaggacc |
103 |
Q |
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| T |
31526008 |
attcttcaccaaaaacatgcattaaccctagagtatatcgaactaatccacatgtttgaatcctctacaaatgttatatgatgttgtacttgtaagaacc |
31525909 |
T |
|
| Q |
104 |
gttaaatttagacagtggaatttaaagttatttctttctctaaacctaacaattcatataactacaacatcattatgtattttgctgatccaaatcctta |
203 |
Q |
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| T |
31525908 |
attaaatttagagaatgggattcaaagttatttctttctctaaacctaacgattcatataactacaacatcataatgtattttgcttatccaaatcctta |
31525809 |
T |
|
| Q |
204 |
atctatagagacaatatgcnnnnnnnnnttcttggtgataattaggtctagagataattcaaatatgataataaaagtagagtgacaattgagttcaatt |
303 |
Q |
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| T |
31525808 |
atctacagagacaatatgc-aatattttttcgtggtgataattaggtctagagataattcaaatatgataataaaagtagagtgacaattgagttcaatt |
31525710 |
T |
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| Q |
304 |
attcattatt----aatcattcaactatagatctttccaccaacactaccnnnnnnngaggccctaagccatatatattagctgtggcaaaattatgaga |
399 |
Q |
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| T |
31525709 |
attcattattaatcaatcattcaactatagatctttccaacaacactaccaaaaaaagaggcccttagccatatatattagctgtggcaaaattatgaga |
31525610 |
T |
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| Q |
400 |
gagactaccatttacca |
416 |
Q |
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| T |
31525609 |
gagactaccatttacca |
31525593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 409 - 665
Target Start/End: Complemental strand, 31525556 - 31525301
Alignment:
| Q |
409 |
atttaccattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataacatacatattacactcgttcttatatttg |
508 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
31525556 |
atttaacattcaagtgtttaaccacatctaacttctccaccacacatacggagtgatatatggacccataatatacttattacactcgttcttatatttg |
31525457 |
T |
|
| Q |
509 |
ttattttttcttattattagacctatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacacnaaacaaaatc |
608 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31525456 |
ttattttttcttattattagacccatgacatcactgattttttctgtcttttatatcatccccatcagtatccatgttttttgaaacac-aaacaaaatc |
31525358 |
T |
|
| Q |
609 |
ttgtttgtttattattttggccacatgagacaatgcattataagacnaaccaccctg |
665 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
31525357 |
ttgtttgtttattattttggccacatgagacaatgcgttataagacgaaccaccctg |
31525301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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