View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679-INSERTION-12 (Length: 200)

Name: NF0679-INSERTION-12
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679-INSERTION-12
NF0679-INSERTION-12
[»] chr3 (12 HSPs)
chr3 (47-200)||(53688320-53688472)
chr3 (1-50)||(53688469-53688518)
chr3 (47-89)||(48160350-48160392)
chr3 (47-89)||(10348816-10348858)
chr3 (47-89)||(24485477-24485518)
chr3 (47-81)||(26007636-26007670)
chr3 (47-85)||(42672977-42673014)
chr3 (47-89)||(42673313-42673354)
chr3 (47-85)||(47666352-47666390)
chr3 (47-84)||(40848521-40848557)
chr3 (47-84)||(48159897-48159934)
chr3 (47-87)||(3353125-3353164)
[»] chr8 (4 HSPs)
chr8 (47-89)||(24473338-24473380)
chr8 (47-89)||(37397162-37397204)
chr8 (47-87)||(9623499-9623539)
chr8 (47-87)||(25438789-25438829)
[»] chr4 (12 HSPs)
chr4 (47-86)||(4239383-4239422)
chr4 (47-89)||(32703667-32703709)
chr4 (47-84)||(169013-169051)
chr4 (47-84)||(292782-292819)
chr4 (47-84)||(293234-293271)
chr4 (47-84)||(9380307-9380344)
chr4 (47-84)||(9380758-9380795)
chr4 (47-84)||(26207361-26207397)
chr4 (47-84)||(28196790-28196827)
chr4 (47-84)||(39744030-39744067)
chr4 (47-84)||(48405962-48405998)
chr4 (47-83)||(25161879-25161915)
[»] chr7 (8 HSPs)
chr7 (47-89)||(37888828-37888870)
chr7 (47-85)||(9035310-9035348)
chr7 (47-84)||(10533034-10533071)
chr7 (47-84)||(29292922-29292959)
chr7 (47-88)||(29293363-29293404)
chr7 (47-84)||(37889276-37889313)
chr7 (47-84)||(37972413-37972450)
chr7 (47-86)||(3204667-3204704)
[»] chr2 (4 HSPs)
chr2 (47-89)||(17850973-17851015)
chr2 (47-82)||(19141446-19141481)
chr2 (47-89)||(5378656-5378698)
chr2 (47-84)||(37720204-37720241)
[»] chr1 (20 HSPs)
chr1 (47-89)||(9347121-9347163)
chr1 (47-89)||(13918441-13918483)
chr1 (47-89)||(27172111-27172152)
chr1 (47-84)||(4692450-4692487)
chr1 (47-87)||(20371370-20371409)
chr1 (47-87)||(20480629-20480668)
chr1 (47-87)||(49318183-49318222)
chr1 (47-89)||(47498296-47498336)
chr1 (47-82)||(50526489-50526524)
chr1 (47-85)||(49317751-49317788)
chr1 (47-93)||(50615638-50615683)
chr1 (47-93)||(50623466-50623511)
chr1 (47-84)||(9347568-9347604)
chr1 (47-84)||(19007735-19007771)
chr1 (47-84)||(32163060-32163097)
chr1 (47-84)||(44911025-44911062)
chr1 (47-84)||(46824295-46824332)
chr1 (47-88)||(48105133-48105174)
chr1 (47-87)||(21687022-21687062)
chr1 (82-118)||(42225387-42225423)
[»] scaffold0041 (1 HSPs)
scaffold0041 (47-84)||(38712-38749)
[»] scaffold0029 (1 HSPs)
scaffold0029 (47-84)||(9905-9942)
[»] scaffold0069 (1 HSPs)
scaffold0069 (47-87)||(50524-50563)
[»] chr6 (2 HSPs)
chr6 (47-89)||(22684375-22684416)
chr6 (47-89)||(22754652-22754693)
[»] chr5 (6 HSPs)
chr5 (47-89)||(12498562-12498604)
chr5 (47-84)||(12498945-12498982)
chr5 (47-84)||(26571181-26571218)
chr5 (47-84)||(34147527-34147564)
chr5 (47-84)||(37610202-37610238)
chr5 (47-84)||(37780320-37780356)
[»] scaffold0460 (1 HSPs)
scaffold0460 (47-87)||(780-819)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 53688320 - 53688472
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaactaaaactggcacaaaattgtttaaaatccacattggaagagcttttgagtttttta 146  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  53688320 aattggcaaactatagggg-agaaagtgcaattaagccaaaaactaaaactggcacgaaattgtttaaaatccacattggaagagcttttgagtttttta 53688418  T
Q  147 agttgatgtcattcaactttgttatgtaacttcaattattttaaatggcacaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53688419 agttgatgtcattcaactttgttatgtaacttcaattattttaaatggcacaaa 53688472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 53688469 - 53688518
Alignment:
Q  1 caaactcagtacttaattccctggtctagaaagataagtatttatgaatt 50  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53688469 caaactcggtacttaattccctggtctagaaagataagtatttatgaatt 53688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 48160350 - 48160392
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  48160350 aattggcaaactatagggggggaaagtgcaattaagccaaaaa 48160392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 10348816 - 10348858
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||| | ||| |||||||||||||||||||||    
T  10348816 aattggcaaactatatgaggaaaaagtgcaattaagccaaaaa 10348858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 24485477 - 24485518
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  24485477 aattggcaaactatagggaga-aaagtgcaattaagccaaaaa 24485518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 26007636 - 26007670
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaa 81  Q
    ||||||||||||||||||||| |||||||||||||    
T  26007636 aattggcaaactatagggggaaaaagtgcaattaa 26007670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 42673014 - 42672977
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcca 85  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  42673014 aattggcaaactataggggga-aaagtgcaattaagcca 42672977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 42673313 - 42673354
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||| ||||||||||||||| |||||||||||||||||||||    
T  42673313 aattgacaaactataggggga-aaagtgcaattaagccaaaaa 42673354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 47666352 - 47666390
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcca 85  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  47666352 aattggcaaactataggggggaaaagtgcaattaagcca 47666390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 40848557 - 40848521
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  40848557 aattggcaaactataggggga-aaagtgcaattaagcc 40848521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 48159934 - 48159897
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  48159934 aattggcaaactataggggggaaaagtgcaattaagcc 48159897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 3353164 - 3353125
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  3353164 aattgacaaactataggggga-aaagtgcaattaagccaaa 3353125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 24473380 - 24473338
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  24473380 aattggcaaactatagggggaaaaagtgcaattaagccaaaaa 24473338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 37397162 - 37397204
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  37397162 aattggcaaactataggggggaaaagtgcaattaagccaaaaa 37397204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 9623539 - 9623499
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    |||||||||||||||| | || |||||||||||||||||||    
T  9623539 aattggcaaactatagtgagaaaaagtgcaattaagccaaa 9623499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 25438829 - 25438789
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||||||||||||||||||  |||||||||||||| ||||    
T  25438829 aattggcaaactataggggggaaaagtgcaattaagtcaaa 25438789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 86
Target Start/End: Original strand, 4239383 - 4239422
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaa 86  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  4239383 aattggcaaactatagggggaaaaagtgcaattaagccaa 4239422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 32703667 - 32703709
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  32703667 aattggcaaactataggggggaaaagtgcaattaagccaaaaa 32703709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 169051 - 169013
Alignment:
Q  47 aattggcaaactatagggggag-aaagtgcaattaagcc 84  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  169051 aattggcaaactatagggggagaaaagtgcaattaagcc 169013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 292819 - 292782
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  292819 aattggcaaactataggggggaaaagtgcaattaagcc 292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 293234 - 293271
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  293234 aattgacaaactatagggggaaaaagtgcaattaagcc 293271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 9380344 - 9380307
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  9380344 aattggcaaactataggggggaaaagtgcaattaagcc 9380307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 9380758 - 9380795
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  9380758 aattggcaaactataggggggaaaagtgcaattaagcc 9380795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 26207397 - 26207361
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    |||||||||||||||||||| |||||||||||||||||    
T  26207397 aattggcaaactataggggg-gaaagtgcaattaagcc 26207361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 28196790 - 28196827
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  28196790 aattggcaaactataggggggaaaagtgcaattaagcc 28196827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 39744067 - 39744030
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  39744067 aattggtaaactatagggggaaaaagtgcaattaagcc 39744030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 48405998 - 48405962
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48405998 aattggcaaactataggggga-aaagtgcaattaagcc 48405962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 25161915 - 25161879
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagc 83  Q
    ||||||||||||||||||||  |||||||||||||||    
T  25161915 aattggcaaactataggggggaaaagtgcaattaagc 25161879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 37888870 - 37888828
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  37888870 aattggcaaactataggggggaaaagtgcaattaagccaaaaa 37888828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 9035310 - 9035348
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcca 85  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  9035310 aattggcaaactataggggggaaaagtgcaattaagcca 9035348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 10533071 - 10533034
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  10533071 aattggcaaactataggggggaaaagtgcaattaagcc 10533034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 29292959 - 29292922
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  29292959 aattggcaaactataggggggaaaagtgcaattaagcc 29292922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 29293363 - 29293404
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaa 88  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  29293363 aattggcaaactataggggggaaaaatgcaattaagccaaaa 29293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 37889276 - 37889313
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  37889276 aattggcaaactataggggggaaaagtgcaattaagcc 37889313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 37972413 - 37972450
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  37972413 aattggcaaactataggggggaaaagtgcaattaagcc 37972450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 3204704 - 3204667
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaa 86  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  3204704 aattggcaaactatagggg--gaaagtgcaattaagccaa 3204667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 17851015 - 17850973
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  17851015 aattggcaaactataggggggaaaagtgcaattaagccaaaaa 17850973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 82
Target Start/End: Complemental strand, 19141481 - 19141446
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaag 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  19141481 aattggcaaactatagggggaaaaagtgcaattaag 19141446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 5378698 - 5378656
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  5378698 aattggcaaactataggggggaaaagtgcaattaagcctaaaa 5378656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 37720241 - 37720204
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  37720241 aattggcaaactataggggggaaaagtgcaattaagcc 37720204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 9347163 - 9347121
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  9347163 aattggcaaactataggggggaaaagtgcaattaagccaaaaa 9347121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 13918483 - 13918441
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||| ||| |||||||||||||||||||||    
T  13918483 aattggcaaactataggaggaaaaagtgcaattaagccaaaaa 13918441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 27172152 - 27172111
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  27172152 aattggcaaactataggggga-aaagtgcaattaagccaaaaa 27172111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 4692450 - 4692487
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  4692450 aattggcaaactatagggggaaaaagtgcaattaagcc 4692487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20371370 - 20371409
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  20371370 aattggcaaactataggggga-aaagtgcaattaagccaaa 20371409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 20480629 - 20480668
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  20480629 aattggcaaactataggggga-aaagtgcaattaagccaaa 20480668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 49318183 - 49318222
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  49318183 aattggcaaactataggggg-gaaagtgcaattaagccaaa 49318222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 47498336 - 47498296
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  47498336 aattggcaaactataggggga--aagtgcaattaagccaaaaa 47498296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 82
Target Start/End: Original strand, 50526489 - 50526524
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaag 82  Q
    ||||||||||||||||||||| ||||||||||||||    
T  50526489 aattggcaaactatagggggaaaaagtgcaattaag 50526524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 49317788 - 49317751
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcca 85  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  49317788 aattggcaaactataggggga-aaagtgcaattaagcca 49317751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 50615638 - 50615683
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaactaa 93  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  50615638 aattgacaaactataggggga-aaagtgcaattaagccaaaatctaa 50615683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 93
Target Start/End: Original strand, 50623466 - 50623511
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaactaa 93  Q
    ||||| ||||||||||||||| |||||||||||||||||||| ||||    
T  50623466 aattgacaaactataggggga-aaagtgcaattaagccaaaatctaa 50623511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 9347568 - 9347604
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    |||||||||||||||||||| |||||||||||||||||    
T  9347568 aattggcaaactataggggg-gaaagtgcaattaagcc 9347604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 19007771 - 19007735
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    |||||||||||||||||||| |||||||||||||||||    
T  19007771 aattggcaaactataggggg-gaaagtgcaattaagcc 19007735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 32163060 - 32163097
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  32163060 aattggcaaactataggggggaaaagtgcaattaagcc 32163097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 44911062 - 44911025
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  44911062 aattggcaaaatatagggggggaaagtgcaattaagcc 44911025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 46824295 - 46824332
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  46824295 aattggcaaactataggaggaaaaagtgcaattaagcc 46824332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 48105133 - 48105174
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaa 88  Q
    ||||||||||||||| ||||  ||||||||||||||||||||    
T  48105133 aattggcaaactataagggggaaaagtgcaattaagccaaaa 48105174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Complemental strand, 21687062 - 21687022
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||| ||||||||||||||  |||||||||||||||||||    
T  21687062 aattgacaaactataggggggaaaagtgcaattaagccaaa 21687022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 42225423 - 42225387
Alignment:
Q  82 gccaaaaactaaaactggcacaaaattgtttaaaatc 118  Q
    ||||||||||||||||| | |||||||||||||||||    
T  42225423 gccaaaaactaaaactgcctcaaaattgtttaaaatc 42225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 38712 - 38749
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  38712 aattggcaaactatagggggaaaaagtgcaattaagcc 38749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 9942 - 9905
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  9942 aattggcaaactatagggggaaaaagtgcaattaagcc 9905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 50524 - 50563
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  50524 aattggcaaactataggggga-aaagtgcaattaagccaaa 50563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 22684375 - 22684416
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  22684375 aattggcaaactataagggga-aaagtgcaattaagccaaaaa 22684416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 22754693 - 22754652
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  22754693 aattggcaaactataagggga-aaagtgcaattaagccaaaaa 22754652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 12498604 - 12498562
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaaaa 89  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  12498604 aattggcaaactataggggggaaaagtgcaattaagcctaaaa 12498562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 12498945 - 12498982
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  12498945 aattggcaaactataggggggaaaagtgcaattaagcc 12498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 26571181 - 26571218
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||  ||||||||||||||||    
T  26571181 aattggcaaactataggggggaaaagtgcaattaagcc 26571218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 34147527 - 34147564
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  34147527 aattgacaaactatagggggaaaaagtgcaattaagcc 34147564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 37610238 - 37610202
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37610238 aattggcaaactataggggga-aaagtgcaattaagcc 37610202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 37780356 - 37780320
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagcc 84  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  37780356 aattggcaaactataggggga-aaagtgcaattaagcc 37780320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 780 - 819
Alignment:
Q  47 aattggcaaactatagggggagaaagtgcaattaagccaaa 87  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  780 aattggcaaactataggggaa-aaagtgcaattaagccaaa 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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