View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0679-INSERTION-13 (Length: 586)
Name: NF0679-INSERTION-13
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 266 - 521
Target Start/End: Complemental strand, 35091646 - 35091392
Alignment:
| Q |
266 |
tacggtgatatggtctttatttccatacgggattcttggactactgaaattgtgatcgcaaagaatccgaatttagataagaacttattattagaagcat |
365 |
Q |
| |
|
|||||||||||||||||||||| | ||| || || | ||||| |||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35091646 |
tacggtgatatggtctttatttagaaacgtgactc-tcgactattgaaattgtgatagcagagaatccaaatttagataagaacttattattagaagcaa |
35091548 |
T |
|
| Q |
366 |
attacatgttcaatgtgataatactagaatttaattattagtgatgtttgtcatattgctcttgagactcagcatgtctgaatgggacatcatatgatac |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35091547 |
attacatgttcaatgtgataatactagaatttaattattagtgatgtttgtcatattgctcttgagacacagcatgtctgaatgggacatcatatgatac |
35091448 |
T |
|
| Q |
466 |
aaattagtactccaaaagatagacatgatcactatcatacttaaaagataaagaga |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35091447 |
aaattagtactccaaaagatagacatgatcactatcatacttaaaagataaagaga |
35091392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 35090917 - 35090743
Alignment:
| Q |
1 |
gaaattgcgcgagatgtttctccagtcgcctttgccatactttagaagtcccatcagaaaacgtctgtacgccgtgattccaaacatgcacaaagagtaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
35090917 |
gaaattgcgcgagatgtttctccagtcgcctttgccatactttagaagtcccatcagaaaacgtctgtacgccgtaattccaaacatgcacaaagagtaa |
35090818 |
T |
|
| Q |
101 |
attcaataacaagtaacttttaaaaggggtaaaggcgaactcttaaaccaactcaatttaacatgtcaattgatt |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35090817 |
attcaataacaagtaacttttaaaaggggtaaaggcaaactcttaaaccaactcaatttaacatgtcaattgatt |
35090743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 35091744 - 35091676
Alignment:
| Q |
180 |
aggcatttcaattctaaatcttgttgttggttccgttctttttggatgaagatctgacagttcgtcttt |
248 |
Q |
| |
|
||||||||||||||||||||||||| |||| || ||| ||| |||||||||||||| |||||||||| |
|
|
| T |
35091744 |
aggcatttcaattctaaatcttgtttttggccacgctctctttagatgaagatctgacggttcgtcttt |
35091676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1262 times since January 2019
Visitors: 4365