View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0679-INSERTION-14 (Length: 589)
Name: NF0679-INSERTION-14
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-14 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] scaffold0209 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 589
Target Start/End: Original strand, 178048 - 178633
Alignment:
| Q |
1 |
aaaactatatgacacagttgttccaagcagtgacaaaaagtacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178048 |
aaaactatatgacacagttgttccaagcagtgacaaaaagcacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacat |
178147 |
T |
|
| Q |
101 |
gaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178148 |
gaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatca---cttcatttcattgatttaattagatgtgcttatctccccatgaaaatta |
178244 |
T |
|
| Q |
201 |
gcactaagcactctgattctcataaagagtgtttgatgttaaggagtgcagcaaagttgaatgaagctggtataagctttgagaaggttcataacaaatc |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
178245 |
gcactaagaactctgattctcataaagagtgtttgatgttaaggagtgcaacaaagttgaatgaagctggtataagctttgagaaggttcataacagatc |
178344 |
T |
|
| Q |
301 |
cttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatcttgcaagtgtgttaaagctagatttcagttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
178345 |
cttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatgttgcaagtgtgttaaagctagatttcagttc |
178444 |
T |
|
| Q |
401 |
ccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178445 |
ccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatg |
178544 |
T |
|
| Q |
501 |
tttctttgatcgattctcttattcaaaccaaagatgatgtagagtggcttgntgagaaagaaattgtggtgcacgaactgggaagcgac |
589 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
178545 |
tttctttgattgattctcttattcaaaccaaagatgatgtagagtggcttgttgagaaagaaattgtggtgcacgaactgggaagcgac |
178633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 115739 - 115160
Alignment:
| Q |
1 |
aaaactatatgacacagttgttccaagcagtgacaaaaagtacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacat |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||| |||| |||||||| || ||||||||||| ||||||| ||||||||| || ||||| | |
|
|
| T |
115739 |
aaaactatatgacacaattgttccaagcaaggtcaaaaagcacaattggtttctcaagcttgcacatgagtattttgcatcttgttacccgcatcacaag |
115640 |
T |
|
| Q |
101 |
gaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaatta |
200 |
Q |
| |
|
||||| ||||||||| | ||||| | ||||||| |||||||||||| | |||||||| |||||| ||||||| | | |||||||| |||||| | | |
|
|
| T |
115639 |
gaatc---ttcagaaagaaagtttgaggcaaagaaatgggagaaatca---cgtcatttcactgatttgattagatattcctatctccctatgaaactaa |
115546 |
T |
|
| Q |
201 |
gcactaagcactctgattctcataaagagtgtttgatgttaaggagtgcagcaaagttgaatgaagctggtataagctttgagaaggttcataacaaatc |
300 |
Q |
| |
|
| | || | ||||| ||| ||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
115545 |
aaaatcagtataatgattttcacaaagaatgtttgatggtaaggactgcaacaaagttgaatgaagctggtataagctttgagaaggttcataacagatc |
115446 |
T |
|
| Q |
301 |
cttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatcttgcaagtgtgttaaagctagatttcagttc |
400 |
Q |
| |
|
|| |||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||| | ||||||||| | ||||||||||||| ||| |
|
|
| T |
115445 |
attgcttgacataaagtttgagaaaaaacctttgttgagttggtttctttgtttaggttgtttaccgtgttgcaagtgcttcaaagctagatttctattc |
115346 |
T |
|
| Q |
401 |
ccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatg |
500 |
Q |
| |
|
||||||||||||||||| ||| | || ||||||||| | || ||| || | |||| ||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
115345 |
ccacagttaaaagtagatcatgcgaccgaatgtgttttgaggaacatagttgcttttgagcagtgtcactatcctgatgagccttacatttgcaattatg |
115246 |
T |
|
| Q |
501 |
tttctttgatcgattctcttattcaaaccaaagatgatgtagagtggcttgntgagaaagaaattgtggtgcacgaactgggaagc |
586 |
Q |
| |
|
|||||||||| |||||||||||||| ||| |||| || | ||||| ||| | |||||||||| | | |||||||| ||||||||| |
|
|
| T |
115245 |
tttctttgattgattctcttattcacaccgaagaagacgcagagttgctagttgagaaagaagtgattgtgcacgatctgggaagc |
115160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 586
Target Start/End: Original strand, 606738 - 607305
Alignment:
| Q |
1 |
aaaactatatgacacagttgttccaagcagtgacaaaaagtacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacat |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||| |||| ||||| | || || |||||||| ||||||| ||||||||| |||||||| | |
|
|
| T |
606738 |
aaaattatatgacacggttgttccaagcagtgtcaaaaaccacaatcggtttatcaagctagcacatgagtattttgcatcttgttaccctcatcacaag |
606837 |
T |
|
| Q |
101 |
gaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaatta |
200 |
Q |
| |
|
|| ||||| |||||| ||||||| | ||| || |||||||||||| || ||||||| ||||| ||||||| | | |||||||| |||||| | | |
|
|
| T |
606838 |
gagtcatc---agaaagaatgtttgaggaaaaaaattgggagaaatca---ctccatttcaccgatttgattagatattcatatctcccaatgaaactaa |
606931 |
T |
|
| Q |
201 |
gcactaagcactctgattctcataaagagtgtttgatgttaaggagtgcagcaaagttgaatgaagctggtataagctttgagaaggttcataacaaatc |
300 |
Q |
| |
|
|| | | | |||||||| || ||||||||||||| ||||| |||| ||||||||||||||||||| |||||| | ||||| ||| |||| | ||| |
|
|
| T |
606932 |
gcgatcaatatatggattctcaaaatgagtgtttgatgtcaaggactgcaacaaagttgaatgaagctggcataagcctcgagaaagtttataatagatc |
607031 |
T |
|
| Q |
301 |
cttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatcttgcaagtgtgttaaagctagatttcagttc |
400 |
Q |
| |
|
|||||||||||| |||||| |||||| | ||| ||| | |||| | ||| || ||||| |||| | ||| ||||||||||| |||| |
|
|
| T |
607032 |
cttacttgacataaagtttaagaaaaggcattttttgtccttgtttctttgt---ggctgttttccatgcttcaa---------agctagatttctgttc |
607119 |
T |
|
| Q |
401 |
ccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatg |
500 |
Q |
| |
|
||||| ||||||||| |||| |||| ||| | ||||||| || ||||| |||| ||||| ||||| || || ||| |||| |||||||||||||||| |
|
|
| T |
607120 |
ccacaattaaaagtaaaccactcaacagaaagcattcttaggaatctaattgcttttgagcagtgtcattatccagacaagccctacatttgcaattatg |
607219 |
T |
|
| Q |
501 |
tttctttgatcgattctcttattcaaaccaaagatgatgtagagtggcttgntgagaaagaaattgtggtgcacgaactgggaagc |
586 |
Q |
| |
|
|||||||| | |||||||||||| | ||||||||||||| ||||| | | | ||||||||| || | ||||| ||||| |||||| |
|
|
| T |
607220 |
tttctttgcttgattctcttattgacaccaaagatgatgcagagttgttggttgagaaagatatgattgtgcatgaactaggaagc |
607305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 517
Target Start/End: Original strand, 143235 - 143339
Alignment:
| Q |
413 |
gtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcactaccctgacgagccttacatttgcaattatgtttctttgatcg |
512 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||| | || ||||||||||| | || | |||| ||| ||||| ||||||||||| || | |
|
|
| T |
143235 |
gtagaccaagcaacagaatgtgttcttaggaacctaatcgcatttgaacaatgtcactattcagagcaacctttcatatgcaactatgtttctttaattg |
143334 |
T |
|
| Q |
513 |
attct |
517 |
Q |
| |
|
||||| |
|
|
| T |
143335 |
attct |
143339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 272 - 585
Target Start/End: Complemental strand, 9866 - 9562
Alignment:
| Q |
272 |
ataagctttgagaaggttcataacaaatccttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatctt |
371 |
Q |
| |
|
||||||||| |||| ||||| ||| || ||||||||||||||| ||| ||||||| || || || ||||||||| | ||||||||||||||||||| || |
|
|
| T |
9866 |
ataagctttcagaaagttcacaaccgatgcttacttgacattaaatttcagaaaaagccctttttcagttggtttctttgtttaggttgtttaccatgtt |
9767 |
T |
|
| Q |
372 |
gcaagtgtgttaaagctagatttcagttcccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcacta |
471 |
Q |
| |
|
||| ||||| ||||| ||||| || || ||||| ||||||||||| |||||||||||||| ||||| || |||| |||||||||||||| |
|
|
| T |
9766 |
tcaa---------agctaaatttctattccctcaattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtcacta |
9676 |
T |
|
| Q |
472 |
ccctgacgagccttacatttgcaattatgtttctttgatcgattctcttattcaaaccaaagatgatgtagagtggcttgntgagaaagaaattgtggtg |
571 |
Q |
| |
|
|| |||||||| || ||||| || ||||||||||| | |||||||||||||| ||||||||||||| ||||| | | | ||||||||| | | ||| |
|
|
| T |
9675 |
tccagacgagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtg |
9576 |
T |
|
| Q |
572 |
cacgaactgggaag |
585 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
9575 |
cacgaactaggaag |
9562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 272 - 585
Target Start/End: Complemental strand, 23320 - 23016
Alignment:
| Q |
272 |
ataagctttgagaaggttcataacaaatccttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgtttaccatctt |
371 |
Q |
| |
|
||||||||| |||| ||||| ||| || ||||||||||||||| ||| ||||||| || || || ||||||||| | ||||||||||||||||||| || |
|
|
| T |
23320 |
ataagctttcagaaagttcacaaccgatgcttacttgacattaaatttcagaaaaagccctttttcagttggtttctttgtttaggttgtttaccatgtt |
23221 |
T |
|
| Q |
372 |
gcaagtgtgttaaagctagatttcagttcccacagttaaaagtagaccatacaactgaatgtgttcttagaaacctaatcgcttacgagcaatgtcacta |
471 |
Q |
| |
|
||| ||||| ||||| ||||| || || ||||| ||||||||||| |||||||||||||| ||||| || |||| |||||||||||||| |
|
|
| T |
23220 |
tcaa---------agctaaatttctattccctcaattgaaagtggaccatacaaccgaatgtgttcttaggaacctcatggcttttgagcaatgtcacta |
23130 |
T |
|
| Q |
472 |
ccctgacgagccttacatttgcaattatgtttctttgatcgattctcttattcaaaccaaagatgatgtagagtggcttgntgagaaagaaattgtggtg |
571 |
Q |
| |
|
|| |||||||| || ||||| || ||||||||||| | |||||||||||||| ||||||||||||| ||||| | | | ||||||||| | | ||| |
|
|
| T |
23129 |
tccagacgagccctatatttgtaactatgtttcttttcttgattctcttattcacaccaaagatgatgcagagttgttggtcgagaaagaagtgattgtg |
23030 |
T |
|
| Q |
572 |
cacgaactgggaag |
585 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
23029 |
cacgaactaggaag |
23016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 37438365 - 37438009
Alignment:
| Q |
1 |
aaaactatatgacacagttgttccaagcagtgacaaaaagtacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacat |
100 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||| ||||||| |||| |||||| | || || |||||| ||| ||| ||||||||| ||| ||| | |
|
|
| T |
37438365 |
aaaactatatgacatagttgtcccaaccagtgtcaaaaaggacaattggtttatcaagctatcacatgcatacttttcatcttgttacccttgtcacaaa |
37438266 |
T |
|
| Q |
101 |
gaatcatcttcagaaagtatgtttgggtcaaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaatta |
200 |
Q |
| |
|
||||| ||||||||| | ||||| |||||| || ||||| |||| | ||||||||||||||||| ||||||||| | ||||||| |||||| | | |
|
|
| T |
37438265 |
gaatc---ttcagaaagaaagtttgagtcaaaaaattgggacaaataa---cttcatttcattgatttgattagatgttatgatctcccgatgaaactaa |
37438172 |
T |
|
| Q |
201 |
gcactaagcactctgattctcataaagagtgtttgatgttaaggagtgcagcaaagttgaatgaagctggtataagctttgagaaggttcataacaaatc |
300 |
Q |
| |
|
||| | | | ||||||||| |||||||||||||||||||||| | || ||| |||||||||||| |||||||||||||||| ||||||| | ||| |
|
|
| T |
37438171 |
gcaatcaaaatattgattctcaaaaagagtgtttgatgttaaggactccaacaacattgaatgaagctagtataagctttgagaaaattcataaaagatc |
37438072 |
T |
|
| Q |
301 |
cttacttgacattaagtttgagaaaaaccctttgttgagttggtttttatgtttaggttgttt |
363 |
Q |
| |
|
||| || || | |||||||||| ||| ||||| |||||| |||| | ||||| |||||||| |
|
|
| T |
37438071 |
cttgatttacgtaaagtttgagataaaaccttttctgagttagtttatttgtttgggttgttt |
37438009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 497 - 537
Target Start/End: Complemental strand, 37437954 - 37437914
Alignment:
| Q |
497 |
tatgtttctttgatcgattctcttattcaaaccaaagatga |
537 |
Q |
| |
|
|||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
37437954 |
tatgtttctttgattgattgtcttattcacaccaaagatga |
37437914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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