View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-15 (Length: 313)
Name: NF0679-INSERTION-15
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-15 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31164221 - 31164071
Alignment:
| Q |
1 |
aaagcagtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgatt |
100 |
Q |
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| T |
31164221 |
aaagcagtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgatt |
31164122 |
T |
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| Q |
101 |
ttatgccatagacaaggctaccaatatatgttgccatcaaagaaccaattg |
151 |
Q |
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| T |
31164121 |
ttatgccatagacaaggctaccaatatatgttgccatcaaagaaccaattg |
31164071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 145 - 310
Target Start/End: Complemental strand, 31164385 - 31164220
Alignment:
| Q |
145 |
ccaattgcaattccagcaacaaaaccagataaatgtcccacctgcaaaatatgtttaacttttagctagcnnnnnnngtggaatcattgctaattattaa |
244 |
Q |
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| T |
31164385 |
ccaattgcaattccagcaacaaaaccagataaatgtcccacctgcaaaatatgtttaactttaagctagcaaaaaaagtggaatcattgctaattattaa |
31164286 |
T |
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| Q |
245 |
ggaacatatataaatatgtaactttcttccttaattagtacttactgattgatgttcagatgtcaa |
310 |
Q |
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| T |
31164285 |
ggaacatatataaatatgtaactttcttccttaattagtacttactgattgatgttcagatgtcaa |
31164220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 36573396 - 36573526
Alignment:
| Q |
7 |
gtaaccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacctctgattttatgc |
106 |
Q |
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| T |
36573396 |
gtaaccaaaaacgcgatgatgaatattgcaattacctccacccataaggctgagctacacccttcaaatggatgagtcatcataacctctaatttaatgc |
36573495 |
T |
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| Q |
107 |
catagacaaggctaccaatatatgttgccat |
137 |
Q |
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| T |
36573496 |
catagacaagactactaatatatgttgccat |
36573526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 36573332 - 36573391
Alignment:
| Q |
251 |
tatataaatatgtaactttcttccttaattagtacttactgattgatgttcagatgtcaa |
310 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||| |
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| T |
36573332 |
tatataaatatgtaactttcctccttaataagtacttactgattgatgttccgatatcaa |
36573391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 11157729 - 11157647
Alignment:
| Q |
11 |
ccaaaaacatgatgatgaatgttgcaataacctccacccagaaggcagagttacacccttggagtggttgagtcatcataacc |
93 |
Q |
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| T |
11157729 |
ccaaaaacatgatgatgaatgttgcaataacctccacccagaagacagggttacacccttggagtggctgagtcatcataacc |
11157647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 11157798 - 11157738
Alignment:
| Q |
250 |
atatataaatatgtaactttcttccttaattagtacttactgattgatgttcagatgtcaa |
310 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
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| T |
11157798 |
atatataaatatgtaactttcttccttgattagtacttacctgttgaggttcagatgtcaa |
11157738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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