View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679-INSERTION-16 (Length: 143)

Name: NF0679-INSERTION-16
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679-INSERTION-16
NF0679-INSERTION-16
[»] chr3 (2 HSPs)
chr3 (1-143)||(3022829-3022971)
chr3 (1-60)||(47931769-47931827)
[»] chr2 (4 HSPs)
chr2 (1-62)||(36013524-36013584)
chr2 (1-47)||(32070476-32070521)
chr2 (2-52)||(37980601-37980650)
chr2 (1-47)||(40739572-40739617)
[»] chr4 (2 HSPs)
chr4 (1-60)||(50519342-50519400)
chr4 (15-52)||(34458995-34459032)
[»] chr7 (1 HSPs)
chr7 (15-60)||(27234951-27234996)
[»] chr6 (1 HSPs)
chr6 (1-62)||(31872848-31872908)
[»] chr1 (1 HSPs)
chr1 (2-55)||(50998311-50998363)
[»] chr5 (1 HSPs)
chr5 (1-55)||(27990437-27990490)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 3022829 - 3022971
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaatggagagtgagtacacaatctctttagaacgagtatgttcactct 100  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3022829 catacataaggaatttgaatgaacctaaaaaatcaaattttcttataattagcaacggagagtgagtacacaatctctttagaacgagtatgttcactct 3022928  T
Q  101 atagcttcaaagttgagcatttttaattctcttccctaataat 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3022929 atagcttcaaagttgagcatttttaattctcttccctaataat 3022971  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 47931769 - 47931827
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaatggag 60  Q
    ||||||||| ||||| |||| |||||||||||| |||||  ||||||||| |||||||||    
T  47931769 catacatcattaatt-gaataaacctaaaaaattaaatttgcttataattggcaatggag 47931827  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 36013584 - 36013524
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaatggagag 62  Q
    ||||||||| |||||  ||||||||||||||||| |||| |||||||||| |||||||||||    
T  36013584 catacatcattaatta-aatgaacctaaaaaatctaattttcttataattggcaatggagag 36013524  T

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Target: chr2; HSP #2
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 32070521 - 32070476
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttata 47  Q
    ||||||||| ||||| |||||||||||||||||||||||  ||||||    
T  32070521 catacatcattaatt-gaatgaacctaaaaaatcaaatttacttata 32070476  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 37980650 - 37980601
Alignment:
Q  2 atacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattag 52  Q
    |||||||| ||||| |||||||||||||||||||| ||  |||||||||||    
T  37980650 atacatcattaatt-gaatgaacctaaaaaatcaattttacttataattag 37980601  T

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Target: chr2; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40739572 - 40739617
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttata 47  Q
    ||||||||| ||||| |||||||||||||||||||||||  ||||||    
T  40739572 catacatcattaatt-gaatgaacctaaaaaatcaaatttacttata 40739617  T

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Target: chr4 (Bit Score: 33; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50519342 - 50519400
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaatggag 60  Q
    ||||||||| ||||| ||||||||||||||| |||||||  ||||||||| |||||||||    
T  50519342 catacatcattaatt-gaatgaacctaaaaagtcaaatttgcttataattggcaatggag 50519400  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 34459032 - 34458995
Alignment:
Q  15 ttgaatgaacctaaaaaatcaaattntcttataattag 52  Q
    |||||||||||||||||||||||||  |||||||||||    
T  34459032 ttgaatgaacctaaaaaatcaaatttacttataattag 34458995  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 27234951 - 27234996
Alignment:
Q  15 ttgaatgaacctaaaaaatcaaattntcttataattagcaatggag 60  Q
    ||||||||||||||||| |||||||  |||||||||||||| ||||    
T  27234951 ttgaatgaacctaaaaagtcaaatttacttataattagcaacggag 27234996  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31872908 - 31872848
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaatggagag 62  Q
    ||||||||| ||||| ||||||||||||||| | ||||| ||||||||||  ||||||||||    
T  31872908 catacatcattaatt-gaatgaacctaaaaatttaaattttcttataattgacaatggagag 31872848  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 50998363 - 50998311
Alignment:
Q  2 atacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaa 55  Q
    |||||||| ||||| |||||||||||||||||||||||  ||||||||| ||||    
T  50998363 atacatcattaatt-gaatgaacctaaaaaatcaaatttgcttataattggcaa 50998311  T

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Target: chr5 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27990437 - 27990490
Alignment:
Q  1 catacatcagtaatttgaatgaacctaaaaaatcaaattntcttataattagcaa 55  Q
    ||||||||| ||||| ||||||||||||||| | |||||  ||||||||||||||    
T  27990437 catacatcattaatt-gaatgaacctaaaaagtgaaatttgcttataattagcaa 27990490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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