View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679-INSERTION-18 (Length: 664)

Name: NF0679-INSERTION-18
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679-INSERTION-18
NF0679-INSERTION-18
[»] chr2 (15 HSPs)
chr2 (3-656)||(38076722-38077376)
chr2 (301-387)||(13866943-13867029)
chr2 (292-393)||(4350746-4350847)
chr2 (282-386)||(43456627-43456731)
chr2 (293-381)||(28803455-28803543)
chr2 (338-394)||(28810364-28810420)
chr2 (282-353)||(5902502-5902573)
chr2 (237-352)||(8187407-8187522)
chr2 (299-354)||(12140595-12140650)
chr2 (330-393)||(16552469-16552532)
chr2 (262-380)||(43065373-43065494)
chr2 (302-387)||(22878164-22878249)
chr2 (9-78)||(34020132-34020201)
chr2 (293-390)||(44606026-44606123)
chr2 (301-353)||(2964762-2964814)
[»] chr7 (11 HSPs)
chr7 (293-387)||(23214912-23215006)
chr7 (301-353)||(36537973-36538025)
chr7 (301-380)||(25670512-25670591)
chr7 (307-353)||(28128353-28128399)
chr7 (321-394)||(529447-529520)
chr7 (307-388)||(4970710-4970790)
chr7 (329-390)||(32730164-32730225)
chr7 (237-393)||(33645873-33646029)
chr7 (302-371)||(34754745-34754814)
chr7 (312-344)||(20526251-20526283)
chr7 (293-373)||(33894684-33894764)
[»] chr4 (21 HSPs)
chr4 (307-381)||(18628478-18628552)
chr4 (293-392)||(28615392-28615490)
chr4 (6-79)||(36237277-36237350)
chr4 (237-350)||(50799986-50800098)
chr4 (293-373)||(2996630-2996710)
chr4 (301-380)||(24370877-24370956)
chr4 (337-391)||(18512430-18512484)
chr4 (293-393)||(6428075-6428175)
chr4 (293-381)||(19304983-19305071)
chr4 (263-379)||(33534096-33534212)
chr4 (301-353)||(46247270-46247322)
chr4 (325-381)||(46860007-46860063)
chr4 (307-353)||(46013266-46013312)
chr4 (307-393)||(47399556-47399642)
chr4 (329-394)||(51414244-51414309)
chr4 (332-393)||(54277236-54277297)
chr4 (321-381)||(1017113-1017173)
chr4 (263-351)||(1137739-1137827)
chr4 (301-393)||(7367967-7368059)
chr4 (293-349)||(27721774-27721830)
chr4 (307-387)||(37575855-37575935)
[»] chr5 (17 HSPs)
chr5 (293-373)||(11095428-11095508)
chr5 (243-346)||(37611175-37611278)
chr5 (243-346)||(37787905-37788008)
chr5 (325-394)||(10303885-10303954)
chr5 (262-379)||(11457125-11457241)
chr5 (301-394)||(12459913-12460006)
chr5 (333-373)||(33401922-33401962)
chr5 (301-381)||(38728467-38728547)
chr5 (314-373)||(12407663-12407722)
chr5 (323-373)||(4273310-4273360)
chr5 (337-387)||(36796626-36796676)
chr5 (301-394)||(10125630-10125723)
chr5 (301-390)||(11297112-11297201)
chr5 (325-381)||(4855784-4855840)
chr5 (300-344)||(11064731-11064775)
chr5 (330-394)||(14331460-14331524)
chr5 (293-373)||(32172710-32172790)
[»] chr3 (21 HSPs)
chr3 (237-373)||(48286743-48286879)
chr3 (307-387)||(50211806-50211886)
chr3 (263-361)||(43115083-43115181)
chr3 (293-346)||(25182947-25183000)
chr3 (307-388)||(44014716-44014797)
chr3 (325-385)||(22667492-22667552)
chr3 (325-385)||(22724131-22724191)
chr3 (293-345)||(34707457-34707509)
chr3 (237-353)||(37273135-37273251)
chr3 (301-353)||(50015951-50016003)
chr3 (293-352)||(24281104-24281163)
chr3 (263-389)||(11253528-11253654)
chr3 (301-387)||(40880867-40880953)
chr3 (330-392)||(41848630-41848692)
chr3 (338-388)||(51929843-51929893)
chr3 (296-354)||(53735924-53735982)
chr3 (349-394)||(4534287-4534332)
chr3 (262-347)||(14548680-14548765)
chr3 (268-333)||(47132026-47132091)
chr3 (242-391)||(54180695-54180844)
chr3 (325-393)||(20210841-20210909)
[»] chr8 (17 HSPs)
chr8 (264-386)||(4560530-4560652)
chr8 (293-394)||(9700058-9700159)
chr8 (282-381)||(39881646-39881745)
chr8 (307-388)||(6526170-6526251)
chr8 (264-381)||(6950350-6950467)
chr8 (307-388)||(16162831-16162912)
chr8 (307-387)||(2487927-2488007)
chr8 (330-392)||(1892138-1892200)
chr8 (307-353)||(7918734-7918780)
chr8 (262-344)||(30918139-30918220)
chr8 (264-353)||(2091791-2091880)
chr8 (264-353)||(14949894-14949983)
chr8 (293-370)||(31915229-31915306)
chr8 (325-353)||(1561366-1561394)
chr8 (311-387)||(8060744-8060819)
chr8 (321-353)||(14242981-14243013)
chr8 (301-353)||(45098926-45098978)
[»] chr1 (20 HSPs)
chr1 (301-379)||(4757403-4757481)
chr1 (294-353)||(4033970-4034029)
chr1 (329-380)||(48748521-48748572)
chr1 (267-373)||(15581285-15581391)
chr1 (321-387)||(35017668-35017733)
chr1 (242-332)||(37811858-37811948)
chr1 (262-387)||(6292519-6292643)
chr1 (294-387)||(34536216-34536309)
chr1 (226-394)||(10199320-10199488)
chr1 (292-346)||(16980859-16980913)
chr1 (302-344)||(50644216-50644258)
chr1 (201-353)||(6231769-6231919)
chr1 (296-393)||(23373226-23373323)
chr1 (251-388)||(32515359-32515496)
chr1 (293-353)||(4768782-4768842)
chr1 (325-361)||(18011893-18011929)
chr1 (307-347)||(24338644-24338684)
chr1 (237-381)||(27140479-27140623)
chr1 (296-352)||(42336675-42336731)
chr1 (294-346)||(49692012-49692064)
[»] chr6 (13 HSPs)
chr6 (307-391)||(33737641-33737725)
chr6 (293-373)||(27857415-27857495)
chr6 (293-352)||(32917254-32917313)
chr6 (262-373)||(33080511-33080622)
chr6 (321-391)||(7351586-7351656)
chr6 (332-373)||(8420130-8420171)
chr6 (293-354)||(10031789-10031850)
chr6 (302-347)||(31686322-31686367)
chr6 (292-361)||(34538163-34538232)
chr6 (337-393)||(8010458-8010514)
chr6 (264-388)||(30863274-30863398)
chr6 (301-353)||(32577939-32577991)
chr6 (321-373)||(33738066-33738118)
[»] scaffold0459 (1 HSPs)
scaffold0459 (301-394)||(6611-6704)
[»] scaffold0366 (1 HSPs)
scaffold0366 (301-394)||(6609-6702)


Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 3 - 656
Target Start/End: Complemental strand, 38077376 - 38076722
Alignment:
Q  3 attatactttcaccaggtgcaagaataccacctggagggcgcatgtaacaacttttcggtgcagttgtttgaaactaagacaaaagaagacatcatcatt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38077376 attatactttcaccaggtgcaagaataccacctggagggcgcatgtaacaacttttcggtgcagttgtttgaaactaagacaaaagaagacatcatcatt 38077277  T
Q  103 agtatttaggcccagtttggttaaatagtttaattaatgcatatagtataatcacttgatatataagtgtttaggtataatctacgtttatnnnnnnnga 202  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  38077276 agtatttaggcctagtttggataaatagtttaattaacgcatatagtataatcacttgatatataagtgtttaggtataatctacgtttataaaaaaaga 38077177  T
Q  203 taaataaagtcaaattgtcttgatcgtataatcgataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaat 302  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||    
T  38077176 taaataaagtcaaattgtcttgatcatataatcgataaactgttttcttaagctatcacggagagcttatagaaataggctgaaaacctcttatggaaat 38077077  T
Q  303 gtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacccttcgcaaata 402  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38077076 gtcgtaagttgttttaagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacccttcgcaaata 38076977  T
Q  403 atgtgattacttct-nnnnnnnnnncagataatggcattagatgatcattttcaacaaattaaacttcctatcatctagtcaaaatagcaaacattctca 501  Q
    ||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38076976 atgtgattacttctaaaaaaaaaaacagataatggcattagatgatcattttcaacaaattaaacttcctatcatctagtcaaaatagcaaacattctca 38076877  T
Q  502 agattttcaaacatttggtgaaaaaatcccaagatgaaagctttctcaattttcaaatgggaaaattgctaattttcgaaaaacatttctaattttcaat 601  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38076876 agattttcaaacatttggtgaaaaagtcccaagatgaaagctttctcaattttcaaatgggaaaattgctaattttcgaaaaacatttctaattttcaat 38076777  T
Q  602 tttctaggttgaaacttgaaacagcagccaaattgcaaaaaagtcactaatttat 656  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38076776 tttctaggttgaaacttgaaacagcagccaaattgcaaaaaagtcactaatttat 38076722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 301 - 387
Target Start/End: Original strand, 13866943 - 13867029
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||| || |||||||||  ||||||||||||||| |||||||||||||||||  | |||| ||||||||||| ||||||| |||||    
T  13866943 atgtcataggttgttttcttaagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaataggtcaatccaaaca 13867029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 292 - 393
Target Start/End: Original strand, 4350746 - 4350847
Alignment:
Q  292 tttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacc 391  Q
    |||||| | ||||| |||| |||||||| ||||||||||||||||||||  ||||| |||||| | |||| ||||||||||| | ||||| ||||| |||    
T  4350746 tttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaacaaacc 4350845  T
Q  392 ct 393  Q
    ||    
T  4350846 ct 4350847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 386
Target Start/End: Complemental strand, 43456731 - 43456627
Alignment:
Q  282 ctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||||  |||||||| ||||| | ||||||||||| ||| ||| ||||||| ||| |||||||||||||||| || | ||| ||||||| || ||||    
T  43456731 ctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttcaaataagtaaatc 43456632  T
Q  382 gaaac 386  Q
     ||||    
T  43456631 caaac 43456627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 381
Target Start/End: Complemental strand, 28803543 - 28803455
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||| ||||| |||||||||| || | ||||||||||||| ||||||| ||| |||||    |||| ||||||||||| |||||||    
T  28803543 ttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtcaatc 28803455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 338 - 394
Target Start/End: Complemental strand, 28810420 - 28810364
Alignment:
Q  338 ctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||| |||||| |||||    
T  28810420 ctcacaagtgtttatgccaatagagaagctcaaataagtcaatccaaacaggccctt 28810364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 5902573 - 5902502
Alignment:
Q  282 ctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||||||  |||||| | ||||| |||| |||||||| |||||||  |||||| |||||||||||||||||    
T  5902573 ctgaaaacagtttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 352
Target Start/End: Complemental strand, 8187522 - 8187407
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaa 336  Q
    ||||||||||||| ||||| | || |||||| |||| ||||||  ||||||||   ||  | |||| || |||||||| |||| ||||||| |||||||     
T  8187522 ataaactgttttcataagctaccatggagagattatggaaataacctgaaaacaacttgcgaaaatttcataagttgtattcataagttctttcaaacag 8187423  T
Q  337 tctcacaagtgtttat 352  Q
    ||||||||||| ||||    
T  8187422 tctcacaagtggttat 8187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 12140595 - 12140650
Alignment:
Q  299 aaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgt 354  Q
    ||||||| ||||||||||||| |||||||||||||| || ||  ||||||||||||    
T  12140595 aaatgtcataagttgttttcataagttctctcaaactatttcgtaagtgtttatgt 12140650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 16552532 - 16552469
Alignment:
Q  330 caaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    |||||||||||||||||||||||  || |||| ||||||||  | ||||||| |||||||||||    
T  16552532 caaacaatctcacaagtgtttataagagtagataagctcaagaaagtcaatcaaaacagaccct 16552469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 380
Target Start/End: Complemental strand, 43065494 - 43065373
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtg---aat 358  Q
    ||||||||||| ||||||  ||||||||  |||||||| ||||| ||||||||||||| ||| |||| |||  |    ||||||||||||||||   |||    
T  43065494 ggagagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctctcacaagtagctgcacaagtgtttatgtgatcaat 43065395  T
Q  359 agaaaagctcaaatatgtcaat 380  Q
    ||| || |||||||| ||||||    
T  43065394 agataaactcaaataagtcaat 43065373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 22878164 - 22878249
Alignment:
Q  302 tgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    |||| ||| |||||| || ||| |||| |||||| ||||||||||| |||||| | | || ||||||||||| ||||||| |||||    
T  22878164 tgtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtcaatccaaaca 22878249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 34020132 - 34020201
Alignment:
Q  9 ctttcaccaggtgcaagaataccacctggagggcgcatgtaacaacttttcggtgcagttgtttgaaact 78  Q
    ||||| ||||| |||||||| ||||| ||||| |||||||||||||| || || || || ||||||||||    
T  34020132 ctttctccaggagcaagaatgccaccaggaggccgcatgtaacaactctttggcgccgtagtttgaaact 34020201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 44606123 - 44606026
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagac 390  Q
    ||||||| ||||| ||||||||||||| |||||||  |||||| ||  ||||||  |||||| |||| |||  |||||||| ||||| | ||||||||    
T  44606123 ttatggacatgtcataagttgttttcataagttcttccaaacagtcgtacaagtacttatgtcaatataaacactcaaataagtcaacccaaacagac 44606026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 2964814 - 2964762
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| |||| |||||||| |||||| |||||||| |||| ||||||||||||    
T  2964814 atgtcataagctgttttcataagttcactcaaacattctcgcaagtgtttatg 2964762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 293 - 387
Target Start/End: Original strand, 23214912 - 23215006
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||||||||||| ||||||||||||| || |||||||||||| ||||| |||||||||||  | |||| ||| ||||||| ||||||| |||||    
T  23214912 ttatggaaatgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 36537973 - 36538025
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| |||||||||| || |||||||||||||||||||||||||||||||||    
T  36537973 atgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 25670591 - 25670512
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaat 380  Q
    ||||| ||||||||||||| ||||| ||||||||| ||||||||| | |||||| |||||| |||||||| || ||||||    
T  25670591 atgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaagtaagtcaat 25670512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 28128399 - 28128353
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||||||||||| ||||||||  ||||||||||||||||| |||||    
T  28128399 taagttgttttcacaagttctccaaaacaatctcacaagtgcttatg 28128353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 394
Target Start/End: Original strand, 529447 - 529520
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    |||||||| |||| |  ||||||||||||||||  | |||| ||||||||||| ||||||| || |||||||||    
T  529447 aagttctcccaaatagcctcacaagtgtttatgccagtagataagctcaaataagtcaatccaatcagaccctt 529520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 4970790 - 4970710
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    ||||||||||||| |||||||| |||||| |||||||||   |||||| |  ||| ||||||||||| ||||||| ||||||    
T  4970790 taagttgttttcataagttctcccaaacagtctcacaag-acttatgtcacgagataagctcaaataagtcaatccaaacag 4970710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 390
Target Start/End: Complemental strand, 32730225 - 32730164
Alignment:
Q  329 tcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagac 390  Q
    |||||||||| ||||| ||||||||| | |||  ||||||||||| ||||||||||| ||||    
T  32730225 tcaaacaatcccacaaatgtttatgtcagtaggtaagctcaaataagtcaatcgaaatagac 32730164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 393
Target Start/End: Complemental strand, 33646029 - 33645873
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctct-caaaca 335  Q
    ||||||||||||| ||||| |||  ||||||||||| ||||||  || |||||   |||| || ||||| |||||||||| || ||| ||||| ||| ||    
T  33646029 ataaactgttttcataagctatct-ggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctccaacca 33645931  T
Q  336 atctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
     |||||||||| |||| || |||||| || ||||||| || ||||  ||||| |||||    
T  33645930 gtctcacaagtttttacgtcaatagataaactcaaatctgccaatacaaacaaaccct 33645873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 371
Target Start/End: Complemental strand, 34754814 - 34754745
Alignment:
Q  302 tgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaa 371  Q
    |||| |||| |||||||  ||| ||||||||||| ||||| |||||||| ||| |||||| |||||||||    
T  34754814 tgtcataagatgttttcttaagctctctcaaacagtctcataagtgtttgtgtcaatagataagctcaaa 34754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 312 - 344
Target Start/End: Complemental strand, 20526283 - 20526251
Alignment:
Q  312 tgttttcagaagttctctcaaacaatctcacaa 344  Q
    |||||||| ||||||||||||||||||||||||    
T  20526283 tgttttcataagttctctcaaacaatctcacaa 20526251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 33894684 - 33894764
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||| ||||| || | |||||||| ||| |||| |||||| ||||||||||| |||||| | | || |||||||||||    
T  33894684 ttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaata 33894764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 18628552 - 18628478
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||||||||| ||| |||| |||||| |||||||||||||||||| | |||| ||||||||||| |||||||    
T  18628552 taagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaatacgtcaatc 18628478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 293 - 392
Target Start/End: Original strand, 28615392 - 28615490
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccc 392  Q
    ||||| ||||||| | || |||||||| |||||||| ||||||||||||||||||||||||  | |||| || || ||||| ||||||| ||||||||||    
T  28615392 ttatgaaaatgtcattagctgttttcataagttctc-caaacaatctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagaccc 28615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 36237277 - 36237350
Alignment:
Q  6 atactttcaccaggtgcaagaataccacctggagggcgcatgtaacaacttttcggtgcagttgtttgaaacta 79  Q
    ||||| || ||||||||||| ||| | || ||||| |||||| |||||||||| ||||||||||||||||||||    
T  36237277 atactctcgccaggtgcaaggatagctccaggaggacgcatgaaacaactttttggtgcagttgtttgaaacta 36237350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 237 - 350
Target Start/End: Complemental strand, 50800098 - 50799986
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaa 336  Q
    |||| |||||||||||||| |||| ||||| ||| | ||||||  ||||||||   |||| || ||||| |||||||||| ||  ||||||| |||||||    
T  50800098 ataagctgttttcttaagctatcatggagaactt-tggaaataagctgaaaacagcttatagacatgtcataagttgtttacattagttctcccaaacaa 50800000  T
Q  337 tctcacaagtgttt 350  Q
    ||||||||||||||    
T  50799999 tctcacaagtgttt 50799986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 2996630 - 2996710
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||| ||||| ||||||||||||| ||| ||||||||||| ||||| ||||| |||||| |||| | ||| |||||||    
T  2996630 ttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgtcaataaataagttcaaata 2996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 301 - 380
Target Start/End: Complemental strand, 24370956 - 24370877
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaat 380  Q
    ||||| |||||||||| || ||||| | ||||||| ||||||| ||| ||||| ||||||| ||||||||||| ||||||    
T  24370956 atgtcataagttgtttccataagttttatcaaacattctcacatgtgcttatgcgaatagataagctcaaataagtcaat 24370877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 337 - 391
Target Start/End: Complemental strand, 18512484 - 18512430
Alignment:
Q  337 tctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacc 391  Q
    |||||||||||||||||| | |||| ||||||||||| || ||||||||||||||    
T  18512484 tctcacaagtgtttatgtcagtagataagctcaaataagttaatcgaaacagacc 18512430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 393
Target Start/End: Original strand, 6428075 - 6428175
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccc 392  Q
    ||||||| ||||| ||||||||||||| ||  ||||||||||  ||||||||||| ||||   |||| | ||||||||||| ||||||  ||||| ||||    
T  6428075 ttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaacaaaccc 6428174  T
Q  393 t 393  Q
    |    
T  6428175 t 6428175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 381
Target Start/End: Original strand, 19304983 - 19305071
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||| ||||| |||| ||||| || || ||||| || |||||||||||| || |||||| |||||| || |||||||| |||||||    
T  19304983 ttatggacatgtcataagctgtttccacaaattctcccacacaatctcacaaatgcttatgtcaatagataatctcaaataagtcaatc 19305071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 33534212 - 33534096
Alignment:
Q  263 gagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaa 362  Q
    ||||||||||  |||||  ||||||||   ||||||| |||||  || ||||||||| ||| ||||||||| | ||||||||||  |||||| | ||||     
T  33534212 gagagcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagat 33534113  T
Q  363 aagctcaaatatgtcaa 379  Q
    ||||||||||| |||||    
T  33534112 aagctcaaataagtcaa 33534096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 46247270 - 46247322
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| |||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  46247270 atgtcataagttcttttcataagatctctcagacaatctcacaagtgtttatg 46247322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 46860007 - 46860063
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||||||| | ||||||||| ||||||||||||| ||| ||||||| |||||||    
T  46860007 tctctcaaacagtttcacaagtgcttatgtgaatagataagttcaaataagtcaatc 46860063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 46013312 - 46013266
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    |||||| |||||| ||| ||||||| |||||||||||||||||||||    
T  46013312 taagttcttttcataagatctctcagacaatctcacaagtgtttatg 46013266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 393
Target Start/End: Original strand, 47399556 - 47399642
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    ||||||||||||| |||||||||||| || |||||||||| ||||||  | || | ||| ||||||| || |||  |||||||||||    
T  47399556 taagttgttttcacaagttctctcaatcagtctcacaagtttttatgccagtatataagttcaaataagttaattcaaacagaccct 47399642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 394
Target Start/End: Original strand, 51414244 - 51414309
Alignment:
Q  329 tcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    |||||||  |||||||||| |||||| |||| | ||||| |||||||| |||| ||||||||||||    
T  51414244 tcaaacagcctcacaagtgattatgtcaataaataagcttaaatatgttaatcaaaacagaccctt 51414309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 54277297 - 54277236
Alignment:
Q  332 aacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    |||| ||||| |||||||||||| | |||| ||| ||||||| ||||||| |||||||||||    
T  54277297 aacagtctcataagtgtttatgtcactagataagttcaaataagtcaatctaaacagaccct 54277236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 381
Target Start/End: Original strand, 1017113 - 1017173
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    |||||||  |||||| |||||||||||||||||| | ||||  |||||||||| |||||||    
T  1017113 aagttcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaataagtcaatc 1017173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 351
Target Start/End: Original strand, 1137739 - 1137827
Alignment:
Q  263 gagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgttta 351  Q
    |||||||||| ||||||  ||||||||   ||||| | ||||| |||| |||||||| ||||||||  ||||| | |||||||||||||    
T  1137739 gagagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 393
Target Start/End: Complemental strand, 7368059 - 7367967
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    ||||| |||| ||||||||  || |||| |||||| ||||||||| |||||||    |||| || |||||||| ||||||| |||||||||||    
T  7368059 atgtcataagctgttttcatgagctctcccaaacagtctcacaagcgtttatgcctgtagataaactcaaataagtcaatccaaacagaccct 7367967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 349
Target Start/End: Original strand, 27721774 - 27721830
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtt 349  Q
    ||||||| ||||| ||||| ||||| | ||| ||||| |||||||||||||||||||    
T  27721774 ttatggatatgtcataagtagtttttataagctctcttaaacaatctcacaagtgtt 27721830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 37575935 - 37575855
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    |||||| |||||| ||||||||||||||||| |||| || |||||||  |  ||| || |||||||| ||||||| |||||    
T  37575935 taagttattttcataagttctctcaaacaatgtcacgagagtttatgctagcagataaactcaaataagtcaatccaaaca 37575855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 293 - 373
Target Start/End: Complemental strand, 11095508 - 11095428
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||| ||||| |||| ||||| || ||||||||||||||||| |||||||||||||||| | |||| ||||| |||||    
T  11095508 ttatggacatgtcataagctgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaata 11095428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 37611278 - 37611175
Alignment:
Q  243 tgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcac 342  Q
    ||||||| ||||| |||  ||||||||||| ||||||  ||||||||   ||||| | |||||  |||||||||||| ||| ||||||||||||||||||    
T  37611278 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcac 37611179  T
Q  343 aagt 346  Q
    ||||    
T  37611178 aagt 37611175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 346
Target Start/End: Complemental strand, 37788008 - 37787905
Alignment:
Q  243 tgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcac 342  Q
    ||||||| ||||| |||  ||||||||||| ||||||  ||||||||   ||||| | |||||  |||||||||||| ||| ||||||||||||||||||    
T  37788008 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcac 37787909  T
Q  343 aagt 346  Q
    ||||    
T  37787908 aagt 37787905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 394
Target Start/End: Original strand, 10303885 - 10303954
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||||||| |||||||||| || ||||||   |||| ||||||||||||| ||||| ||||||||||||    
T  10303885 tctctcaaataatctcacaaatgcttatgtccgtagataagctcaaatatgccaatctaaacagaccctt 10303954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 379
Target Start/End: Original strand, 11457125 - 11457241
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    |||||||||||||||||| | ||||| |   ||||||| ||||| |||||||||| || ||| |||   ||||| |||||||||||||| ||  ||||||    
T  11457125 ggagagcttatagaaataatatgaaa-cagcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaataga 11457223  T
Q  362 aaagctcaaatatgtcaa 379  Q
     ||||||||||| |||||    
T  11457224 taagctcaaataagtcaa 11457241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 12460006 - 12459913
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||| ||||||||||||| | |||||| |||||| ||||||| ||| |||||| |  ||| ||||  ||||| ||||||| ||||||||||||    
T  12460006 atgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagataagccgaaataagtcaatccaaacagaccctt 12459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 373
Target Start/End: Original strand, 33401922 - 33401962
Alignment:
Q  333 acaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||||||||||| |||||||| ||||||||||||||||    
T  33401922 acaatctcacaagtgcttatgtgattagaaaagctcaaata 33401962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 381
Target Start/End: Original strand, 38728467 - 38728547
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||| |||| | |||||| ||| |||| ||||||||| |||| ||||||||   |||||| |||||||||||||||||||    
T  38728467 atgtcataagctattttcataagctctcccaaacaatcacacaggtgtttataccaatagataagctcaaatatgtcaatc 38728547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 12407722 - 12407663
Alignment:
Q  314 ttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    |||||| ||| ||||||||||  |||||||||||||||||| |||||| ||| |||||||    
T  12407722 ttttcataagctctctcaaaccgtctcacaagtgtttatgtcaatagataagttcaaata 12407663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 4273360 - 4273310
Alignment:
Q  323 gttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    |||||||||||||||||||||| ||||||||  |||||| ||||| |||||    
T  4273360 gttctctcaaacaatctcacaaatgtttatgccaatagacaagctaaaata 4273310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 337 - 387
Target Start/End: Complemental strand, 36796676 - 36796626
Alignment:
Q  337 tctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    |||||||||||||||||| | |||| ||||||||||| ||||||| |||||    
T  36796676 tctcacaagtgtttatgtcattagataagctcaaataagtcaatccaaaca 36796626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Complemental strand, 10125723 - 10125630
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||| |||||||||| || ||||||||||| ||||| ||||||||| | |||| | |||| ||||| ||||| | ||||  ||| ||||||||    
T  10125723 atgtcataagttgtttacataagttctctcagacaatgtcacaagtgctcatgtcagtagataagcttaaataagccaatttaaagagaccctt 10125630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 11297201 - 11297112
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagac 390  Q
    ||||| |||||||||| || ||| ||| ||||||| ||| |||||||||||||  | |||| ||||| ||||| ||||||  ||||||||    
T  11297201 atgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatgccactagataagcttaaataagtcaattcaaacagac 11297112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 381
Target Start/End: Original strand, 4855784 - 4855840
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||||||| ||||||||||||||| || | || | ||||||||||| |||||||    
T  4855784 tctctcaaacagtctcacaagtgtttaagtcattatataagctcaaataagtcaatc 4855840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 300 - 344
Target Start/End: Original strand, 11064731 - 11064775
Alignment:
Q  300 aatgtcgtaagttgttttcagaagttctctcaaacaatctcacaa 344  Q
    |||||| |||| | |||||| ||||||||||||||||||||||||    
T  11064731 aatgtcataagctattttcataagttctctcaaacaatctcacaa 11064775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 14331460 - 14331524
Alignment:
Q  330 caaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||||||||||  |||| |||||  | |||| ||||||||||| ||||||| ||||||||||||    
T  14331460 caaacaatctcaagagtgcttatgacagtagataagctcaaataagtcaatccaaacagaccctt 14331524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 32172710 - 32172790
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||| ||||| |||||||||| || ||| |||| ||||| |||||||||||| |||||  | || | |||||||||||    
T  32172710 ttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaata 32172790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 237 - 373
Target Start/End: Complemental strand, 48286879 - 48286743
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaa 336  Q
    ||||||||||||| ||||  |||| | ||||||||||||||||  |||| |||  |||||||| |||||||| |||||||||| |||||||| | || |     
T  48286879 ataaactgttttcataagttatcatgtagagcttatagaaataagctgataacggtttatggacatgtcgtaggttgttttcataagttctccctaatag 48286780  T
Q  337 tctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||| | |||||| |||   |||| |||||||||||    
T  48286779 tctcaaaggtgtttttgtccgtagataagctcaaata 48286743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 50211806 - 50211886
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||||||||||| ||||||||||||||| ||| ||||||| |||||| | |||| ||||| ||||| || |||| |||||    
T  50211806 taagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagttaatccaaaca 50211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 263 - 361
Target Start/End: Original strand, 43115083 - 43115181
Alignment:
Q  263 gagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    |||||||||| ||||||  ||||||||   ||||||| ||||| |||||||||| || ||  |||  |||||||||||||||||| |||||| ||||||    
T  43115083 gagagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaataga 43115181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 25183000 - 25182947
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagt 346  Q
    ||||||| ||||| ||||||||||||| ||| ||||||||||| ||||||||||    
T  25183000 ttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaagt 25182947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 44014797 - 44014716
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    |||| |||||||| ||||| ||||||||| |||||||||||||||||  | |||| || |||||||| | ||||| ||||||    
T  44014797 taagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 44014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 22667492 - 22667552
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaa 385  Q
    ||||||||||| ||||||||||| |||||| | |||| ||||||||||| | |||||||||    
T  22667492 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaa 22667552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 325 - 385
Target Start/End: Original strand, 22724131 - 22724191
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaa 385  Q
    ||||||||||| ||||||||||| |||||| | |||| ||||||||||| | |||||||||    
T  22724131 tctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataagccaatcgaaa 22724191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 34707509 - 34707457
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaag 345  Q
    ||||||| |||||  |||||||||||| ||||||||||||||| |||||||||    
T  34707509 ttatggacatgtcacaagttgttttcaaaagttctctcaaacagtctcacaag 34707457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 37273135 - 37273251
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaa 336  Q
    ||||||||||||| ||||| |||  ||||| ||||| ||||||   |||||||   ||||||| ||||| |||||||||| || ||| |||| ||||||     
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacag 37273234  T
Q  337 tctcacaagtgtttatg 353  Q
    |||||| |||| |||||    
T  37273235 tctcaccagtgcttatg 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 50015951 - 50016003
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| || ||| |||||| ||||||||||||||| |||||||||||||||||    
T  50015951 atgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatg 50016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 24281104 - 24281163
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttat 352  Q
    ||||||| || || ||||||||||||| ||| |||||||||||||| |||||||| ||||    
T  24281104 ttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttat 24281163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 11253528 - 11253654
Alignment:
Q  263 gagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaa 362  Q
    |||||||||  ||||||| ||||||||  ||||| || ||||| ||||||||||| | || ||||  |||||| |||| |||||| |||||  | ||||     
T  11253528 gagagcttagggaaataggctgaaaacagtttatagatatgtcataagttgtttttataaattctgccaaacagtctctcaagtgcttatgctagtagat 11253627  T
Q  363 aagctcaaatatgtcaatcgaaacaga 389  Q
    || |||||||| ||||||  |||||||    
T  11253628 aatctcaaataagtcaattcaaacaga 11253654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 301 - 387
Target Start/End: Complemental strand, 40880953 - 40880867
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||||   |||| || | |||||| ||||| ||||| ||||||| |||||    
T  40880953 atgtcataagttgttttcataagctctctcaaacagtctcacgtatgttcatttcaatagataagcttaaataagtcaatccaaaca 40880867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 41848692 - 41848630
Alignment:
Q  330 caaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccc 392  Q
    |||||||||| |||||||||||||| | |||| || |||||||| ||||||| ||| ||||||    
T  41848692 caaacaatcttacaagtgtttatgttagtagataaactcaaataagtcaatctaaatagaccc 41848630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 51929843 - 51929893
Alignment:
Q  338 ctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    ||||||||||||||||  |||||| ||||||||||| ||||||| ||||||    
T  51929843 ctcacaagtgtttatgctaatagataagctcaaataagtcaatccaaacag 51929893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 296 - 354
Target Start/End: Complemental strand, 53735982 - 53735924
Alignment:
Q  296 tggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgt 354  Q
    |||| ||||| ||||||||||  | |||||||||||||||||||||  |||||||||||    
T  53735982 tggacatgtcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgt 53735924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 4534332 - 4534287
Alignment:
Q  349 ttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||||||||||| |||||||||||  ||||||||||||| |||||    
T  4534332 ttatgtgaatagataagctcaaataaatcaatcgaaacaggccctt 4534287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 347
Target Start/End: Complemental strand, 14548765 - 14548680
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtg 347  Q
    ||||||||||| ||||||  ||||||||    |||  ||||||| || |||||||||| ||| ||||||||||| |||||||||||    
T  14548765 ggagagcttatggaaataagctgaaaacagcctattaaaatgtcatacgttgttttcataagctctctcaaacagtctcacaagtg 14548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 47132026 - 47132091
Alignment:
Q  268 cttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaa 333  Q
    |||||| |||||  ||||||||  |||||||| ||| | ||||||||||||| |||||||||||||    
T  47132026 cttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagttctctcaaa 47132091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 391
Target Start/End: Complemental strand, 54180844 - 54180695
Alignment:
Q  242 ctgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctca 341  Q
    |||||||| ||||| || | |||||||||||| |||||  || |||||   ||||||| ||||| |||| |||||  | |||||||| || ||||| |      
T  54180844 ctgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtttctacaagttctcacacacaatatat 54180745  T
Q  342 caagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacc 391  Q
     |||||||||| | |||||||||| || |||| ||| ||| |||||||||    
T  54180744 taagtgtttattttaatagaaaagttcgaataagtcgatccaaacagacc 54180695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 20210909 - 20210841
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    ||||||||||| ||||||||||| |||||| | |||| || ||||||||  |||||| ||||| |||||    
T  20210909 tctctcaaacagtctcacaagtggttatgtcagtagataacctcaaataaatcaatccaaacataccct 20210841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 386
Target Start/End: Original strand, 4560530 - 4560652
Alignment:
Q  264 agagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaa 363  Q
    ||||||||| |||||| |||||||||   |||  || ||||  |||||| ||| || |||||||  ||||||| |||||||||| |||||| |||||| |    
T  4560530 agagcttatcgaaataatctgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagata 4560629  T
Q  364 agctcaaatatgtcaatcgaaac 386  Q
    |||||||||| ||||||| ||||    
T  4560630 agctcaaataagtcaatccaaac 4560652  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 293 - 394
Target Start/End: Original strand, 9700058 - 9700159
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccc 392  Q
    ||||||| ||||| ||| ||| ||||| ||| ||||||||| | |||||||||||||||||  | |||| ||||||||||| || |||| |||||| |||    
T  9700058 ttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 9700157  T
Q  393 tt 394  Q
    ||    
T  9700158 tt 9700159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 282 - 381
Target Start/End: Complemental strand, 39881745 - 39881646
Alignment:
Q  282 ctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
    ||||||||  |||||| | ||||| |||| | |||||| ||| |||  ||||||||||||||||||||||||  |||||| ||| ||||||| |||||||    
T  39881745 ctgaaaactgtttatgaacatgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataagttcaaataagtcaatc 39881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Complemental strand, 6526251 - 6526170
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    ||||||||||||  ||||||||||||||||||||||||| | |||||  | |||| | |||| |||| ||||||| ||||||    
T  6526251 taagttgttttcctaagttctctcaaacaatctcacaagggcttatgccagtagataggctcgaataagtcaatccaaacag 6526170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 381
Target Start/End: Original strand, 6950350 - 6950467
Alignment:
Q  264 agagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaa 363  Q
    ||||||||| ||||||  ||||||||   |||| || ||||| || ||||||| || ||| |||| ||||||||||||||| ||||||||  | |||| |    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagata 6950449  T
Q  364 agctcaaatatgtcaatc 381  Q
    | |||||||| |||||||    
T  6950450 aactcaaataagtcaatc 6950467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 16162831 - 16162912
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    |||| |||||||| ||||| ||||||||| |||||||||||||||||  | |||| || |||||||| | ||||| ||||||    
T  16162831 taagctgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 387
Target Start/End: Complemental strand, 2488007 - 2487927
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||||||||||| |||||||| |||||| ||||||||||| |||||| | ||||  | |||||||| | ||||| |||||    
T  2488007 taagttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 392
Target Start/End: Complemental strand, 1892200 - 1892138
Alignment:
Q  330 caaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccc 392  Q
    ||||||||||||||||||||||||    |||| || |||||||| ||||||| ||||||||||    
T  1892200 caaacaatctcacaagtgtttatgacggtagataaactcaaataagtcaatctaaacagaccc 1892138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 307 - 353
Target Start/End: Complemental strand, 7918780 - 7918734
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||||||||||| ||| |||| |||||| |||||||||||||||||    
T  7918780 taagttgttttcataagctctcccaaacagtctcacaagtgtttatg 7918734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 30918139 - 30918220
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaa 344  Q
    ||||||||||| ||||||  ||||||||   ||||| |||||||  |||||||||||| ||| ||||||||||| ||||||||    
T  30918139 ggagagcttatggaaataagctgaaaacaacttatg-aaatgtcacaagttgttttcataagctctctcaaacagtctcacaa 30918220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 2091791 - 2091880
Alignment:
Q  264 agagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| ||||||||||   |||||||   ||||||| || || |||||||||||    || |||||||||||||||||||||||||||||    
T  2091791 agagcatatagaaataagttgaaaacaacttatggatatatcataagttgtttttgtgagctctctcaaacaatctcacaagtgtttatg 2091880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 353
Target Start/End: Original strand, 14949894 - 14949983
Alignment:
Q  264 agagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    |||| |||||||||||  ||||||||   ||||||| ||||| |||||| |||||| ||| ||||  ||||| |||||||| ||||||||    
T  14949894 agagattatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 370
Target Start/End: Complemental strand, 31915306 - 31915229
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaa 370  Q
    |||||||  |||| ||||||||||  | ||| | ||||||||| |||||||||| |||||||||||||| || |||||    
T  31915306 ttatggacttgtcataagttgtttgtataagctttctcaaacagtctcacaagtatttatgtgaatagataaactcaa 31915229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 353
Target Start/End: Original strand, 1561366 - 1561394
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatg 353  Q
    |||||||||||||||||||||||||||||    
T  1561366 tctctcaaacaatctcacaagtgtttatg 1561394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 387
Target Start/End: Original strand, 8060744 - 8060819
Alignment:
Q  311 ttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    ||||||||| ||| ||||||||||| | ||  |||||||||||| |||||| | ||||||||| ||||||| |||||    
T  8060744 ttgttttcataagctctctcaaacagtttcg-aagtgtttatgtcaatagatatgctcaaataagtcaatccaaaca 8060819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 353
Target Start/End: Original strand, 14242981 - 14243013
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||||||||||||||||||||||||| |||||    
T  14242981 aagttctctcaaacaatctcacaagtgcttatg 14243013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 45098978 - 45098926
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| ||||||||||||| | ||||||  |||||||||| ||||||||||||    
T  45098978 atgtcataagttgttttcataggttctcggaaacaatctctcaagtgtttatg 45098926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 4757403 - 4757481
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaa 379  Q
    ||||| ||||||||||||| |||||||  ||||   |||||||||||||||||| |||||| ||||||||||| |||||    
T  4757403 atgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaataagtcaa 4757481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 294 - 353
Target Start/End: Complemental strand, 4034029 - 4033970
Alignment:
Q  294 tatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    |||||| | ||| |||||| |||||| ||| |||||||||||||||||||||||||||||    
T  4034029 tatggacaagtcataagttattttcataagctctctcaaacaatctcacaagtgtttatg 4033970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 48748572 - 48748521
Alignment:
Q  329 tcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaat 380  Q
    |||||||||||||||||||||||||| ||| || ||||||||||| ||||||    
T  48748572 tcaaacaatctcacaagtgtttatgtcaatggataagctcaaataagtcaat 48748521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 373
Target Start/End: Original strand, 15581285 - 15581391
Alignment:
Q  267 gcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagc 366  Q
    |||||||||||||| ||||||||   |||| || ||||| |||||||||| ||  || |||  |||||||||||||||||| |||||| | |||| ||||    
T  15581285 gcttatagaaataggctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagc 15581384  T
Q  367 tcaaata 373  Q
    | |||||    
T  15581385 taaaata 15581391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 35017668 - 35017733
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    |||||||| ||||||||||||||||||||||||  |||||| ||||||||||| | ||||| |||||    
T  35017668 aagttctc-caaacaatctcacaagtgtttatgccaatagataagctcaaataagccaatctaaaca 35017733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 37811858 - 37811948
Alignment:
Q  242 ctgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaa 332  Q
    |||||||| |||||||||| |||||||| || ||||||   |||||||  |||||| | ||||| |||| |||||||| ||||||||||||    
T  37811858 ctgttttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaa 37811948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 262 - 387
Target Start/End: Original strand, 6292519 - 6292643
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    |||||||||||  |||||  ||||||||   ||||| | ||||| |||| |||||| | || ||||| |||||||||||| ||||| |||||| | ||||    
T  6292519 ggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgttttaaaaa-ttctcccaaacaatctcaaaagtgcttatgtcagtaga 6292617  T
Q  362 aaagctcaaatatgtcaatcgaaaca 387  Q
     ||||||||||| ||||||| |||||    
T  6292618 taagctcaaataagtcaatccaaaca 6292643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 294 - 387
Target Start/End: Original strand, 34536216 - 34536309
Alignment:
Q  294 tatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaaca 387  Q
    |||||| ||||| |||| |||||||| |||   ||||||||| |||||||||||||||||| |||||| | | ||||||| |||| || |||||    
T  34536216 tatggacatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtcaatagatacgttcaaataagtcattccaaaca 34536309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 394
Target Start/End: Complemental strand, 10199488 - 10199320
Alignment:
Q  226 tcgtataatcgataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagtt 325  Q
    ||||||||||||||| || ||||| ||||| ||    ||||||||||  |||||  ||||||||   ||||| | ||||| |||| | ||||||  ||||    
T  10199488 tcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagtt 10199389  T
Q  326 ctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||| |||| | | ||||||||| |||||| | |||| ||||||||||| ||||||| || ||| |||||    
T  10199388 ctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtcaatccaaccaggccctt 10199320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 16980859 - 16980913
Alignment:
Q  292 tttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagt 346  Q
    |||||| |||||||||||||||||| || ||| ||||||||| | ||||||||||    
T  16980859 tttatgaaaatgtcgtaagttgtttccataagctctctcaaatagtctcacaagt 16980913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 344
Target Start/End: Complemental strand, 50644258 - 50644216
Alignment:
Q  302 tgtcgtaagttgttttcagaagttctctcaaacaatctcacaa 344  Q
    |||||||||||||||||| |||||||| |||||| ||||||||    
T  50644258 tgtcgtaagttgttttcataagttctcccaaacagtctcacaa 50644216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 353
Target Start/End: Complemental strand, 6231919 - 6231769
Alignment:
Q  201 gataaataaagtcaaattgtcttgatcgtataatcgataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaa 300  Q
    |||||||||||||||| ||| ||  || ||||||| |||| |||||||| ||||| | |  | ||| ||||||||||||  ||||||||  ||||||||     
T  6231919 gataaataaagtcaaactgtttt--tcatataatctataagctgttttcgtaagctaacctgaagaacttatagaaataagctgaaaacagtttatggac 6231822  T
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| | |||||||| ||  || | ||   ||||||||||||| ||||||||    
T  6231821 atgtcattagttgtttccatgagctatccagaacaatctcacaaatgtttatg 6231769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 23373323 - 23373226
Alignment:
Q  296 tggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    |||| ||||| ||||||||||  | ||| |||| |||||||||||||||||| |||| | | |||| ||| ||||||| ||||||  |||||| ||||    
T  23373323 tggacatgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtcaattcaaacaggccct 23373226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 388
Target Start/End: Complemental strand, 32515496 - 32515359
Alignment:
Q  251 taagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgttt 350  Q
    ||||| |||| |||||||||||||| |||   |||||||   |||| || ||||| || | ||||| || ||| |||| |||||| ||||||||||| ||    
T  32515496 taagctatcatggagagcttatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgctt 32515397  T
Q  351 atgtgaatagaaaagctcaaatatgtcaatcgaaacag 388  Q
    |||| | |||| || ||||||||||  |||| ||||||    
T  32515396 atgttagtagataaactcaaatatgctaatccaaacag 32515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 4768842 - 4768782
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||||| |||||||||| |||||||  ||||| || |||||  |||||||||||||||||    
T  4768842 ttatggacatgtcgtaagctgttttcgtaagttttcccaaactgtctcacaagtgtttatg 4768782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 361
Target Start/End: Original strand, 18011893 - 18011929
Alignment:
Q  325 tctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  18011893 tctctcaaacaatctcacaagtgcttatgttaataga 18011929  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 24338684 - 24338644
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtg 347  Q
    ||||||||||||| ||||||| | |||||||||||||||||    
T  24338684 taagttgttttcacaagttcttttaaacaatctcacaagtg 24338644  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 237 - 381
Target Start/End: Original strand, 27140479 - 27140623
Alignment:
Q  237 ataaactgttttcttaagccatcacggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaa 336  Q
    |||| |||||||  ||||| |||| |||||||||||  |||||  ||||||||   ||||||| ||||| |||| ||||| |  ||  ||||||||| |     
T  27140479 ataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaagag 27140578  T
Q  337 tctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatc 381  Q
     || |||| ||||||||| |||||| ||||||| ||| |||||||    
T  27140579 acttacaattgtttatgtcaatagataagctcatataagtcaatc 27140623  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 352
Target Start/End: Original strand, 42336675 - 42336731
Alignment:
Q  296 tggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttat 352  Q
    |||| ||||| ||||||||||||| ||||| ||||||||| || |||||||| ||||    
T  42336675 tggacatgtcataagttgttttcataagttatctcaaacagtcgcacaagtgcttat 42336731  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 49692064 - 49692012
Alignment:
Q  294 tatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagt 346  Q
    |||||| ||||| |||| | |||||| ||||||||||||||| ||||||||||    
T  49692064 tatggacatgtcataagctattttcataagttctctcaaacagtctcacaagt 49692012  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 391
Target Start/End: Original strand, 33737641 - 33737725
Alignment:
Q  307 taagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacc 391  Q
    |||||||| |||| ||||||||||||||| |  ||||||||||||||| |||||| || ||| |||| |||| || |||||||||    
T  33737641 taagttgtgttcataagttctctcaaacagttgcacaagtgtttatgtcaatagataaactcgaataagtcattccaaacagacc 33737725  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 27857415 - 27857495
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||| ||||| ||||||||||||| ||| |||| |||||| | |||||||||| ||||| | |||| || ||||||||    
T  27857415 ttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaata 27857495  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 32917254 - 32917313
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttat 352  Q
    ||||||| ||||| |||||||||| || ||| |||| |||||| ||||||||||||||||    
T  32917254 ttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttat 32917313  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 262 - 373
Target Start/End: Complemental strand, 33080622 - 33080511
Alignment:
Q  262 ggagagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    ||||||||||||||||||  |||||||    ||||  | ||||| ||||||| |||||||| |||| | ||||||||||||||||| |||||  | || |    
T  33080622 ggagagcttatagaaataaactgaaaataacttataaacatgtcataagttggtttcagaaattctattaaacaatctcacaagtgcttatgccagtaaa 33080523  T
Q  362 aaagctcaaata 373  Q
     |||||||||||    
T  33080522 taagctcaaata 33080511  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 391
Target Start/End: Complemental strand, 7351656 - 7351586
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagacc 391  Q
    ||||||||  ||||||||||||||||| |||||| | |||| || |||||||| ||||||  |||||||||    
T  7351656 aagttctcataaacaatctcacaagtgcttatgtcagtagataaactcaaataagtcaatttaaacagacc 7351586  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 373
Target Start/End: Complemental strand, 8420171 - 8420130
Alignment:
Q  332 aacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    |||| |||||||||||||||||| |||||| |||||||||||    
T  8420171 aacagtctcacaagtgtttatgtcaatagataagctcaaata 8420130  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 10031789 - 10031850
Alignment:
Q  293 ttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgt 354  Q
    ||||||| ||||||||||||| ||||| | | ||| ||||||| ||||||||||| ||||||    
T  10031789 ttatggatatgtcgtaagttggtttcataggctctttcaaacagtctcacaagtgcttatgt 10031850  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 31686367 - 31686322
Alignment:
Q  302 tgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtg 347  Q
    |||| ||||||||||| | ||||||||||||||||| |||||||||    
T  31686367 tgtcataagttgttttgataagttctctcaaacaatgtcacaagtg 31686322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 361
Target Start/End: Complemental strand, 34538232 - 34538163
Alignment:
Q  292 tttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaataga 361  Q
    |||||||| |||||||||| |||||| | ||| ||||||||| | ||||||||||| |||| ||| ||||    
T  34538232 tttatggacatgtcgtaagctgtttttataagatctctcaaatagtctcacaagtgcttatatgagtaga 34538163  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 8010458 - 8010514
Alignment:
Q  337 tctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccct 393  Q
    |||||||| ||||||||  |||||| ||||||| ||| ||||||| |||||||||||    
T  8010458 tctcacaaatgtttatgccaatagataagctcacataagtcaatccaaacagaccct 8010514  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 388
Target Start/End: Original strand, 30863274 - 30863398
Alignment:
Q  264 agagcttatagaaatagtctgaaaaccttttatggaaatgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaa 363  Q
    ||||||||||||| ||  ||||||||   ||||| | ||||| ||||||||||||| ||| |||  |||| | ||| |||||||||||||  |||| | |    
T  30863274 agagcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaata 30863373  T
Q  364 agctcaaatatgtcaatcgaaacag 388  Q
     ||||||||| |||| || ||||||    
T  30863374 ggctcaaataagtcactccaaacag 30863398  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 32577991 - 32577939
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatg 353  Q
    ||||| ||||||||||||| ||| ||||||||||||| || ||||| ||||||    
T  32577991 atgtcataagttgttttcataagctctctcaaacaatgtcccaagtatttatg 32577939  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 33738066 - 33738118
Alignment:
Q  321 aagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaata 373  Q
    ||||||||||||||| |||||||| | ||||||| |||| | |||||||||||    
T  33738066 aagttctctcaaacagtctcacaaatatttatgtcaataaacaagctcaaata 33738118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 6611 - 6704
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||| ||| ||||||||| ||  ||||||||||  ||||||||||| ||||   |||| | ||||||||||| ||||||| ||||| ||||||    
T  6611 atgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaacaaaccctt 6704  T

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Target: scaffold0366 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 394
Target Start/End: Original strand, 6609 - 6702
Alignment:
Q  301 atgtcgtaagttgttttcagaagttctctcaaacaatctcacaagtgtttatgtgaatagaaaagctcaaatatgtcaatcgaaacagaccctt 394  Q
    ||||| ||| ||||||||| ||  ||||||||||  ||||||||||| ||||   |||| | ||||||||||| ||||||| ||||| ||||||    
T  6609 atgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaacaaaccctt 6702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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