View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-2 (Length: 319)
Name: NF0679-INSERTION-2
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-2 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 23339855 - 23339559
Alignment:
| Q |
8 |
tagactcctataaggtatcc-atggtttaagtcatttggatgcgctatgagactaatcctcgagttggtctgccaactaaatggatggcttcaggaatgg |
106 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
23339855 |
tagactcctataaggtatcctatggtttaagtcatttggatgcgctatgag-ctaatccttgagttggtctgccaactaaatggatgacttcaggaatgg |
23339757 |
T |
|
| Q |
107 |
aattcaggttcttttcaagagggagacatgagggaaagtcatgttaccatcacttccgacacaatcgattcaatttaaaatgaataaatatataatgtaa |
206 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23339756 |
aattcaggttcttttcaagagggaaacatgagggaaagtcatgttaccatcacttccgacacaatcgattcgatttaaaatgaataaatatataatgtaa |
23339657 |
T |
|
| Q |
207 |
tgtttctcaccagtccaccagtggcaattttaaggagcaagcaagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339656 |
tgtttctcaccagtccaccagtggcaattttaaggagcaagcaagcaacaacagaaccaagcaactgagcaatccaatacaaaaggcctctaatgagt |
23339559 |
T |
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