View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-21 (Length: 134)
Name: NF0679-INSERTION-21
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-21 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 51 - 134
Target Start/End: Original strand, 41430621 - 41430698
Alignment:
| Q |
51 |
caattgcggtagcatactagcatcaaccctaattaaggatcatggctgcaactgcaactgcaactgtagaggaactagaccgca |
134 |
Q |
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| T |
41430621 |
caattgcggtagcatactagcatcaaccctaattaaggatcatgg------ctgcaactgcaactgtagaggaactagaccgca |
41430698 |
T |
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Target: scaffold0274 (Bit Score: 60; Significance: 5e-26; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 14262 - 14203
Alignment:
| Q |
51 |
caattgcggtagcatactagcatcaaccctaattaaggatcatggctgcaactgcaactg |
110 |
Q |
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| T |
14262 |
caattgcggtagcatactagcatcaaccctaattaaggatcatggctgcaactgcaactg |
14203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 5e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 33368452 - 33368505
Alignment:
| Q |
51 |
caattgcggtagcatactagcatcaaccctaattaaggatcatggctgcaactg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33368452 |
caattgcggtagcatactagcatcaaccctaattaaggatcatggctgcgactg |
33368505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43143059 - 43143003
Alignment:
| Q |
1 |
tatataagtctagactctnnnnnnngtataagtctagattaaaatactcgcaattgc |
57 |
Q |
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| T |
43143059 |
tatataagtctagactctaaaaatagtataagtctagattaaaatactcgcaattgc |
43143003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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