View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-22 (Length: 712)
Name: NF0679-INSERTION-22
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-22 |
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Alignment Details
Target: chr4 (Bit Score: 620; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 3 - 666
Target Start/End: Complemental strand, 41497885 - 41497222
Alignment:
| Q |
3 |
atwattctcttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaaca |
102 |
Q |
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| T |
41497885 |
attattctcttaacgctctcaaagttgagctccgtgtatattttttgtgtgtgcttagacacatgttagactcttattattttagtcgactagttaaaca |
41497786 |
T |
|
| Q |
103 |
aactaattggataatacttttacyctaccttgggggagaagattcgctgcaaaattgtaaggaaaggttaagccatgagatttataacctaggtgagtct |
202 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497785 |
aactaattggataatacttttactctaccttgggggagaagattcactccaaaattgtaaggaaaggttaagccatgagatttataacctaggtgagtct |
41497686 |
T |
|
| Q |
203 |
tagaatttggtttgaacttaactcaacacttcactctcgtaccaatttaaaatttgtgtcgagttaaactcaacccttacaaaatcagggtgcaagaaaa |
302 |
Q |
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||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41497685 |
tagaatttggtttgaacttaattcaacccttcactttcgtaccaatttaaaatttgtgtcgagttagactcaacccttacaaaatcagggtgcaagaaaa |
41497586 |
T |
|
| Q |
303 |
tacggtacacgagtaactaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcckatgtagtctgaattag |
402 |
Q |
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||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41497585 |
tacggcacacgagtatctaatcctgaaattgtgttcttttatgtttatttttactatttcctttgtttcaaatccaattctcctatgtagtctgaattag |
41497486 |
T |
|
| Q |
403 |
tgaatcctaatacagggccatagaagaagaaactccatttcctttctcatctgatatgatatatatgaggagctctagaacaaaaagtaatactaaagag |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497485 |
tgaatcctaatacagggccatagaagaagaaactccatttcctttctcatatgatatgatatatatgaggagctctagaacaaaaagtaatactaaagag |
41497386 |
T |
|
| Q |
503 |
aagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgaycatgccataatctgtatgaggagaggcaccatatttctcttcacgagatc |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497385 |
aagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgatcatgccataatctgtatgaggagaggcaccatatttctcttcacgagatc |
41497286 |
T |
|
| Q |
603 |
ccaattcacctgatataattcacattataaaaggttacatagattatattagttggttttcttt |
666 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41497285 |
ccaattcacctgatataattcacattataaaaggttacatagattatattagttggttttcttt |
41497222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 506 - 622
Target Start/End: Complemental strand, 41491149 - 41491033
Alignment:
| Q |
506 |
atgagaacctgcagtcctggaacaccgttggtcaataggagagtgaycatgccataatctgtatgaggagaggcaccatatttctcttcacgagatccca |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||| || |||||||| || ||||| |
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| T |
41491149 |
atgagaacctgcagtcctggaacaccgttggttaataggagagtgatcatgccataatctgaatgagcagaggcaccacatatctcttcattaggtccca |
41491050 |
T |
|
| Q |
606 |
attcacctgatataatt |
622 |
Q |
| |
|
|||||||| || ||||| |
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| T |
41491049 |
attcacctaatgtaatt |
41491033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 503 - 583
Target Start/End: Complemental strand, 41483306 - 41483226
Alignment:
| Q |
503 |
aagatgagaacctgcagtcctggaacaccgttggtcaataggagagtgaycatgccataatctgtatgaggagaggcacca |
583 |
Q |
| |
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|||||| ||||||| |||||||||||||| ||||| | ||||||||||| |||||||||||||| ||||| |||||||||| |
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| T |
41483306 |
aagatgtgaacctgtagtcctggaacaccattggtgattaggagagtgatcatgccataatctgaatgagcagaggcacca |
41483226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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