View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-3 (Length: 612)
Name: NF0679-INSERTION-3
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 234 - 612
Target Start/End: Original strand, 38075876 - 38076254
Alignment:
| Q |
234 |
catgtgtttatttggttatagattaatgttttgttttaattgtttggtctcaactctcaagtatgatgaatatgttgttttgtttttaattatgttacat |
333 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38075876 |
catgtgtttatttgtttatagattaatgttttgttttaattgtttggtctcaactctcaagtatgatgaatatgttgttttgtttttaattatgttacat |
38075975 |
T |
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| Q |
334 |
taagttaagatttattgtaacgagtggaatctagaatatgactagagtttgtccacaagtccgtcctagctcagcgggcaaaaatgctgaaattgctagg |
433 |
Q |
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| T |
38075976 |
taagttaagatttattgtaacgagtggaatctagaatataactagagtttgtccacaagtctgtcctagctcagccggcaaaaatgctgaaattgctagg |
38076075 |
T |
|
| Q |
434 |
ctggacatcgtgatgggatgtggaaccctggctcctctacttgtgtgtgattttcaatgactattgtcatttcatctatttammaaaaaagaaggtatat |
533 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| ||||||| |
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| T |
38076076 |
ctggacatcgtgatggggtgtggaaccctggctcctctacttgtgtgtgagtttcaatgactattgtcatttcgtctatttacaaaaaaagagggtatat |
38076175 |
T |
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| Q |
534 |
gatttgagtttcatgtagatgttaatgtttagccttgcctagtttggattatcttttactttatgaaagcttaattttt |
612 |
Q |
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| T |
38076176 |
gatttgagtttcatgtagatgttaatgtttagccttgcctagtttggattatcttttactttatgaaagcttaattttt |
38076254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 38075650 - 38075845
Alignment:
| Q |
8 |
acttcttcttcatctacttcttacatgcacaatgttcatcatcagagtcagagtattcattctgttgatagatctgttcctcaatcttcagctacagttt |
107 |
Q |
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| T |
38075650 |
acttcttcttcatctacttcttacatgcacaatgttcatcatcagagtcagagtattcattctgttgatagatctgttcctcaatcttcagctacagttt |
38075749 |
T |
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| Q |
108 |
cttctgtagctaaatctttgcttcctactaggagaagacttcgtcttgatcctcctaacaagctttactttccttgtatgtgtttcttcaaacttg |
203 |
Q |
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| T |
38075750 |
cttctgtagctaaatctttgcttcctactaggagaagacttcgtcttgatcctcctaacaagctttactttccttgtatgtgtttcttcaaacttg |
38075845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 397 - 523
Target Start/End: Original strand, 31507790 - 31507919
Alignment:
| Q |
397 |
tcctagctcagcgggcaaaaatgctgaaattgctaggctggacatcgtgatgggatgtggaaccctggctcctctacttgtgtgtg---attttcaatga |
493 |
Q |
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|||||||||| | ||||||||||| |||||| |||| | ||||| ||||| || | |||||||| || ||| |||||||||| |||| |||||| |
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| T |
31507790 |
tcctagctcaactggcaaaaatgccgaaatttctagtccggacaccgtgaccggggcttgaaccctgacttctccacttgtgtgtctgaatttccaatga |
31507889 |
T |
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| Q |
494 |
ctattgtcatttcatctatttammaaaaaa |
523 |
Q |
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| T |
31507890 |
ctattgtcatttcatctatctaccaaaaaa |
31507919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 523
Target Start/End: Complemental strand, 38504585 - 38504517
Alignment:
| Q |
456 |
gaaccctggctcctctacttgtgtgtga-ttttcaatgactattgtcatttcatctatttammaaaaaa |
523 |
Q |
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|||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||||||| || |||||| |
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| T |
38504585 |
gaaccccggctcctccacttgtgtgtgagtttccaatggctattatcatttcatctatctaccaaaaaa |
38504517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 439
Target Start/End: Complemental strand, 21156077 - 21156034
Alignment:
| Q |
396 |
gtcctagctcagcgggcaaaaatgctgaaattgctaggctggac |
439 |
Q |
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| T |
21156077 |
gtcctagctcaactggcaaaaatgccgaaattgctaggctggac |
21156034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 12978598 - 12978556
Alignment:
| Q |
478 |
gtgtgattttcaatgactattgtcatttcatctatttammaaa |
520 |
Q |
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|||||| |||||||||||| |||||||||||||||||| ||| |
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| T |
12978598 |
gtgtgagtttcaatgactactgtcatttcatctatttacaaaa |
12978556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 505
Target Start/End: Complemental strand, 41845315 - 41845282
Alignment:
| Q |
472 |
acttgtgtgtgattttcaatgactattgtcattt |
505 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
41845315 |
acttgtgtgtgactttcaatgactattgtcattt |
41845282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 515
Target Start/End: Original strand, 17238545 - 17238577
Alignment:
| Q |
483 |
attttcaatgactattgtcatttcatctattta |
515 |
Q |
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| T |
17238545 |
attttcaatgattattgtcatttcatctattta |
17238577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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