View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679-INSERTION-6 (Length: 585)
Name: NF0679-INSERTION-6
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679-INSERTION-6 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 53 - 416
Target Start/End: Original strand, 1411198 - 1411562
Alignment:
| Q |
53 |
gaattcattatcaactgagctaatatggcgggtgctaatgattttccaggcccactcccaattcttgatgacaagaaccgggaaaaaaggcaaatctaaa |
152 |
Q |
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| T |
1411198 |
gaattcattatcaactgagctaatatggcgggtggtaatgattttccaggcccactcccaattcttgatgacaagaaccgggaaaaaaggcaaatctaaa |
1411297 |
T |
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| Q |
153 |
tgaatgcgctattcagatttcaagatgttcttatggagttcaagaactttctgcaaaccattcattagttcaa-gaactgttcataaagatgcaaagaag |
251 |
Q |
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| T |
1411298 |
tgaatgcgctattcagatttcaagatgttcttatggagttgaagaactttctgcaaaccattcattagttcaaagaactgttcataaagatgcaaagaag |
1411397 |
T |
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| Q |
252 |
aaagattgcaaatccattctttatacatcaaagtgttgaagctggcaattttgataggatttttaacgcaacttgttcaaaggatgcatgatatttaatg |
351 |
Q |
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| T |
1411398 |
aaagattgcaaatccattctttatacatcaaagtgttgaagctggcaattttgataggatttttaatgcaacttgttcaaaggatgcatgatatttaatg |
1411497 |
T |
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| Q |
352 |
gtcaagtactgtgaacgtggtgacaaagtcaagaaagggaaattgcaataacttagaagacaata |
416 |
Q |
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| T |
1411498 |
gtcaagtactgtgaacgtggtgacaaagtcaagaaagggaaattgcaataacttagaagacaata |
1411562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 442 - 569
Target Start/End: Original strand, 1411562 - 1411690
Alignment:
| Q |
442 |
aaaagattgttgtgtatgtggcaagg-cttcaaagactagtgccctcaatgaacaattatggtgaggacaccactgatcaagtgatcattgagaaaataa |
540 |
Q |
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| T |
1411562 |
aaaagattgttgtgtatgtggcaagggcttcaaacactagtgccctcaatgaacaattatggtgagaacaccactgatcaagtgatcaatgagaaaataa |
1411661 |
T |
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| Q |
541 |
ggaggaaactgacacctcttttcgatcat |
569 |
Q |
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| T |
1411662 |
ggaggacaatgacacctcttttcgatcat |
1411690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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