View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679-INSERTION-8 (Length: 694)

Name: NF0679-INSERTION-8
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679-INSERTION-8
NF0679-INSERTION-8
[»] chr4 (22 HSPs)
chr4 (100-391)||(55759017-55759326)
chr4 (527-694)||(55759456-55759623)
chr4 (100-225)||(55757629-55757754)
chr4 (100-225)||(55757977-55758102)
chr4 (100-225)||(55758669-55758794)
chr4 (100-223)||(55757803-55757926)
chr4 (100-223)||(55758151-55758274)
chr4 (100-223)||(55758325-55758448)
chr4 (100-223)||(55758499-55758622)
chr4 (100-223)||(55758843-55758966)
chr4 (527-623)||(55759572-55759667)
chr4 (624-694)||(55759437-55759507)
chr4 (147-223)||(55757503-55757578)
chr4 (457-490)||(55759392-55759425)
chr4 (225-256)||(55757772-55757803)
chr4 (225-256)||(55757946-55757977)
chr4 (225-256)||(55758120-55758151)
chr4 (225-256)||(55758294-55758325)
chr4 (225-256)||(55758468-55758499)
chr4 (225-256)||(55758812-55758843)
chr4 (225-256)||(55758986-55759017)
chr4 (227-256)||(55757600-55757629)
[»] chr2 (5 HSPs)
chr2 (624-694)||(38940055-38940125)
chr2 (101-297)||(38940552-38940729)
chr2 (225-295)||(38940705-38940779)
chr2 (527-588)||(38940045-38940106)
chr2 (348-388)||(38940438-38940478)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 100 - 391
Target Start/End: Original strand, 55759017 - 55759326
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55759017 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagttctaaattacaacaaacacgtagattatactcaaagat 55759116  T
Q  200 tatggtgaaaaatcaatcaaaacagc------------------taaacaatcaagtactaaatatcaacaatctaaacaaaaggttagtgaagaaaata 281  Q
    ||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55759117 tatggtgaaaaatcaatcaaaacagcatcaataatcagtaaatctaaacaatcaagtactaaatatcaacaatctaaacaaaaggttagtgaagaaaata 55759216  T
Q  282 atcaaattatgacctagactnnnnnnnttaagatgaataaagttcatgattaatcaattaacgtggtgaaaactcaatcaacaagaacacttgtgaaaaa 381  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55759217 atcaaattatgacctagactaaaaaaattaagatgaataaagttcatgattaatcaattaacgtggtgaaaactcaatcaacaagaacacttgtgaaaaa 55759316  T
Q  382 tcaaattcgt 391  Q
    ||||||||||    
T  55759317 tcaaattcgt 55759326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 527 - 694
Target Start/End: Original strand, 55759456 - 55759623
Alignment:
Q  527 tgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagcatcatgaacaagcattcatgaaaacgaaataatgatacg 626  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55759456 tgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagcatcatgaacaagcattcatgaaaacgaaataatgatacg 55759555  T
Q  627 aaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaanctgaaatggaacgaaggaaga 694  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  55759556 aaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaaga 55759623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 55757629 - 55757754
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55757629 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 55757728  T
Q  200 tatggtgaaaaatcaatcaaaacagc 225  Q
    ||||||||||||||||||||||||||    
T  55757729 tatggtgaaaaatcaatcaaaacagc 55757754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 55757977 - 55758102
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55757977 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 55758076  T
Q  200 tatggtgaaaaatcaatcaaaacagc 225  Q
    ||||||||||||||||||||||||||    
T  55758077 tatggtgaaaaatcaatcaaaacagc 55758102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 55758669 - 55758794
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55758669 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 55758768  T
Q  200 tatggtgaaaaatcaatcaaaacagc 225  Q
    ||||||||||||||||||||||||||    
T  55758769 tatggtgaaaaatcaatcaaaacagc 55758794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 55757803 - 55757926
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55757803 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtaacagtcctaaattacaacaaacacgtagattatactcaaagat 55757902  T
Q  200 tatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||||||||||||||||||    
T  55757903 tatggtgaaaaatcaatcaaaaca 55757926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 55758151 - 55758274
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  55758151 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtaacagtcctaaattacaacaaacacgtagattatactcaaagat 55758250  T
Q  200 tatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||||||||||||||||||    
T  55758251 tatggtgaaaaatcaatcaaaaca 55758274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 55758325 - 55758448
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55758325 ttgaagaaaataattaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 55758424  T
Q  200 tatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||||||||||||||||||    
T  55758425 tatggtgaaaaatcaatcaaaaca 55758448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 55758499 - 55758622
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55758499 ttgaagaaaataattaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 55758598  T
Q  200 tatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||||||||||||||||||    
T  55758599 tatggtgaaaaatcaatcaaaaca 55758622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 55758843 - 55758966
Alignment:
Q  100 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  55758843 ttgaagaaaataatcaaattataacctaatttaagagactaaaagttctccatagtaacagtcctaaattacaacaaacacgtagattatactcaaagag 55758942  T
Q  200 tatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||||||||||||||||||    
T  55758943 tatggtgaaaaatcaatcaaaaca 55758966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 527 - 623
Target Start/End: Original strand, 55759572 - 55759667
Alignment:
Q  527 tgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagcatcatgaacaagcattcatgaaaacgaaataatgat 623  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55759572 tgttaccgtaaagatgaaaaatgcctaaaacctgaaatggaacgaaggaagattcatcagcatcatgaacaagcattcat-aaaacgaaataatgat 55759667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 624 - 694
Target Start/End: Original strand, 55759437 - 55759507
Alignment:
Q  624 acgaaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaanctgaaatggaacgaaggaaga 694  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||    
T  55759437 acgaaaacgaaataaacgatgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaaga 55759507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 55757503 - 55757578
Alignment:
Q  147 ctccatagt-gacagtcctaaattacaacaaacacgtagattatactcaaagattatggtgaaaaatcaatcaaaaca 223  Q
    ||||||||| ||||||||||||||||| |||| || |||| ||||||||  |||||||||||||||||||||||||||    
T  55757503 ctccatagttgacagtcctaaattacatcaaatacatagagtatactca--gattatggtgaaaaatcaatcaaaaca 55757578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 490
Target Start/End: Original strand, 55759392 - 55759425
Alignment:
Q  457 ttcataacacaatagattcatcagtgaacaattc 490  Q
    ||||||||||||||||||||||||||||||||||    
T  55759392 ttcataacacaatagattcatcagtgaacaattc 55759425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55757772 - 55757803
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55757772 ctaaacaatcaagtactaaatatcaacaatct 55757803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55757946 - 55757977
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55757946 ctaaacaatcaagtactaaatatcaacaatct 55757977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55758120 - 55758151
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55758120 ctaaacaatcaagtactaaatatcaacaatct 55758151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55758294 - 55758325
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55758294 ctaaacaatcaagtactaaatatcaacaatct 55758325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55758468 - 55758499
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55758468 ctaaacaatcaagtactaaatatcaacaatct 55758499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55758812 - 55758843
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55758812 ctaaacaatcaagtactaaatatcaacaatct 55758843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 256
Target Start/End: Original strand, 55758986 - 55759017
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||||    
T  55758986 ctaaacaatcaagtactaaatatcaacaatct 55759017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 55757600 - 55757629
Alignment:
Q  227 aaacaatcaagtactaaatatcaacaatct 256  Q
    ||||||||||||||||||||||||||||||    
T  55757600 aaacaatcaagtactaaatatcaacaatct 55757629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 624 - 694
Target Start/End: Complemental strand, 38940125 - 38940055
Alignment:
Q  624 acgaaaacgaaataaacgatgttatcgtaaagatgaaaaatgcctaaaanctgaaatggaacgaaggaaga 694  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||||| ||||    
T  38940125 acgaaaacgaaataaacgatgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaaga 38940055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 297
Target Start/End: Complemental strand, 38940729 - 38940552
Alignment:
Q  101 tgaagaaaataatcaaattataacctaatttaagagactaaaagttctc-catagtgacagtcctaaattacaacaaacacgtagattatactcaaagat 199  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||  ||||||||||||||            |||| ||||||||||||||||||    
T  38940729 tgaagaaaataatcaaatgatgaccaaatttaagagactaaaagttctcaaatagtgacagtcct------------acacatagattatactcaaagat 38940642  T
Q  200 tatggtgaaaaatcaatcaaaacagctaaacaatcaagtactaaatatcaacaatc-taaacaaaaggtt---agtgaagaaaataatcaaattatgacc 295  Q
     |||||||||||| |||||             |||||||||||||||||||||||| |||||||||||||   |||||| ||||||||||||| ||||||    
T  38940641 catggtgaaaaattaatca------------tatcaagtactaaatatcaacaatcttaaacaaaaggttatgagtgaaaaaaataatcaaataatgacc 38940554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 38940779 - 38940705
Alignment:
Q  225 ctaaacaatcaagtactaaatatcaacaatc-taaacaaaaggtt---agtgaagaaaataatcaaattatgacc 295  Q
    |||||||||||||||||| |||||||||||| |||||||||||||   |||||||||||||||||||| ||||||    
T  38940779 ctaaacaatcaagtactagatatcaacaatcttaaacaaaaggttatgagtgaagaaaataatcaaatgatgacc 38940705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 38940106 - 38940045
Alignment:
Q  527 tgttaccgtaaagatgaaaaatgcctaagacctgaaatcgaacgaaggaagattcatcagca 588  Q
    |||||||||||||||||||||| ||||| ||||||||  |||||||| ||||||||||||||    
T  38940106 tgttaccgtaaagatgaaaaattcctaaaacctgaaacggaacgaagaaagattcatcagca 38940045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 348 - 388
Target Start/End: Complemental strand, 38940478 - 38940438
Alignment:
Q  348 tgaaaactcaatcaacaagaacacttgtgaaaaatcaaatt 388  Q
    |||||||||||| |||||||||||||| ||||||| |||||    
T  38940478 tgaaaactcaataaacaagaacacttgagaaaaataaaatt 38940438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 921 times since January 2019
Visitors: 4362