View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0679-INSERTION-9 (Length: 678)

Name: NF0679-INSERTION-9
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0679-INSERTION-9
NF0679-INSERTION-9
[»] chr2 (1 HSPs)
chr2 (1-678)||(1412273-1412953)


Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 1412953 - 1412273
Alignment:
Q  1 atactctagtgcttttggtgctggttttgataacacaaccacaacagctttacttatatatactgattctcagcaccatca---cnnnnnnnngccaatt 97  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |        |||||||    
T  1412953 atactctagtacttttggtgctggttttgataacacaaccacaacagctttacttatatatactgattctcatcaccatcatcacaaaaaaaagccaatt 1412854  T
Q  98 cttcctcaacttcctccttacaacaaaacacaagcatcaactagctttacaaagaaattcagaagccttgctacaaaaactcacccaataaatgttgcta 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  1412853 cttcctcaacttcctccttacaacaaaacacaagcatcgactagctttacaaagaaattcagaagccttgctacaaaaactcatccaataaatgttccta 1412754  T
Q  198 caaaagttgacacacatttgttgttcacaatttctgttaatttgctcaactgtactcaagataaaccctgcaccggtccgttcggaaaaaggtttgcagc 297  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1412753 cagaagttgacacacatttgttgttcacaatttctgttaatttgctcaactgtactcaagataaaccctgcaccggtccgttcggaaaaaggtttgcagc 1412654  T
Q  298 tagtgtgaacaacattagtctagtgcatccatatattgattttctaagtgcctattattataaaatccctggtgtatttgaaatggattttccaagaatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1412653 tagtgtgaacaacattagtctagtgcatccatatattgattttctaagtgcctattattataaaatccctggtgtatttgaaatggattttccaagaatt 1412554  T
Q  398 ccaacaagggaattcaattacacagctgataagttaccagaatattttttgagtacatcatttggcacaaaggtgttggttttggactatgatgcaagtg 497  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1412553 ccaacaagggaattcaattacacagctgataagttaccagaatattttttgagtacatcatttggcacaaaggtgttggttttggactatgatgcaagtg 1412454  T
Q  498 ttgagcttgtactgcaagggactaatgtgttagcaagtgataatcaccctgttcatttgcatggatatagtttttatgtggttggttggggttttgggaa 597  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  1412453 ttgagcttgtactgcaagggactaatgtgttagcaagtgataatcaccctgttcatttgcatggatatagtttctatgtaattggttggggttttgggaa 1412354  T
Q  598 ttttgatcctaaaaaagatcctaaaaactataatcttattgatccaccagangaaactacagttggagtaccaaataatgg 678  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1412353 ttttgatcctaaaaatgatcctaaaaactataatcttattgatccaccagaggaaactacagttggagtaccaaataatgg 1412273  T

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