View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_high_13 (Length: 295)
Name: NF0679_high_13
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_high_13 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 126063 - 125834
Alignment:
| Q |
1 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgtacgaccatttatgtagcaaaggatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
126063 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgttcgaccatttatgtagcaaaggatttgt |
125964 |
T |
|
| Q |
101 |
aaaaggatatatggaatggatttatcacggtgaagatgaaagtcttttggatcttgatggtgatagtcatgaccaaacatcatctcatgatgatattaat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
125963 |
aaaaggatacatggaatggatttatcacggtgaagatgaaagtcttatggatcttgatggtgatagtcatgacgaaacatcatctcatgatgatattaat |
125864 |
T |
|
| Q |
201 |
gggttactttttgagacgtttgatgatgtc |
230 |
Q |
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| T |
125863 |
gggttactttttgagacgtttaaagatgtc |
125834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 18447431 - 18447660
Alignment:
| Q |
1 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgtacgaccatttatgtagcaaaggatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18447431 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgttcgaccatttatgtagcaaaggatttgt |
18447530 |
T |
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| Q |
101 |
aaaaggatatatggaatggatttatcacggtgaagatgaaagtcttttggatcttgatggtgatagtcatgaccaaacatcatctcatgatgatattaat |
200 |
Q |
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| T |
18447531 |
aaaaggatacatggaatggatttatcacggtgaagatgaaagtcttatggatcttgatggtgatagtcatgacgaaacatcatctcatgatgatattaat |
18447630 |
T |
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| Q |
201 |
gggttactttttgagacgtttgatgatgtc |
230 |
Q |
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| T |
18447631 |
gggttactttttgagacgtttaaagatgtc |
18447660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 19489922 - 19489693
Alignment:
| Q |
1 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgtacgaccatttatgtagcaaaggatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19489922 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgttcgaccatttatgtagcaaaggatttgt |
19489823 |
T |
|
| Q |
101 |
aaaaggatatatggaatggatttatcacggtgaagatgaaagtcttttggatcttgatggtgatagtcatgaccaaacatcatctcatgatgatattaat |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
19489822 |
aaaaggatacgtggaatggatttatcacggtgaagatgaaagtcttatggatcttgatggtgatagtcatgacgaaacatcatctcatgatgatattaat |
19489723 |
T |
|
| Q |
201 |
gggttactttttgagacgtttgatgatgtc |
230 |
Q |
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| T |
19489722 |
gggttactttttgagacgtttaaagatgtc |
19489693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 9824889 - 9824660
Alignment:
| Q |
1 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgtacgaccatttatgtagcaaaggatttgt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9824889 |
ttgaagaagaagagattttgtgcccctgtgttgtatgttgcaatgatagttgggaaaccagagatgtagtgttcgaccatttatgtagcaaaggatttgt |
9824790 |
T |
|
| Q |
101 |
aaaaggatatatggaatggatttatcacggtgaagatgaaagtcttttggatcttgatggtgatagtcatgaccaaacatcatctcatgatgatattaat |
200 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9824789 |
aaaaggatacatggaatggatttatcacggtgaagatgaaagtcttatggatcttgatggtgatagtcatgacgaaacatcatctcatgatgatattaat |
9824690 |
T |
|
| Q |
201 |
gggttactttttgagacgtttgatgatgtc |
230 |
Q |
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||||||||||||||||||||| | |||||| |
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| T |
9824689 |
gggttactttttgagacgtttaaagatgtc |
9824660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 21227842 - 21227967
Alignment:
| Q |
105 |
ggatatatggaatggatttatcacggtgaagatgaaagtcttttggatcttgatggtgatagtcatgaccaaacatcatctcatgatgatattaatgggt |
204 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
21227842 |
ggatttatggaatggatttatcacggtgaagatgaaagtcttatggatcttgatggtgatagtcacgacaaaacatcatctcatgatgatattaatgggt |
21227941 |
T |
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| Q |
205 |
tactttttgagacgtttgatgatgtc |
230 |
Q |
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|||||||||||| |||| | |||||| |
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| T |
21227942 |
tactttttgagaagtttaaagatgtc |
21227967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21224472 - 21224551
Alignment:
| Q |
1 |
ttgaagaagaagagattttgtgcccctgtgctgtatgttgcaatgatagttgggaaaccagagatgtagtgtacgaccat |
80 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21224472 |
ttgaagaagaagagattttgtgcccttgtgctgtatgttgcaatgatagttgggaaactagagatgtagtgtacgaccat |
21224551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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