View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_high_20 (Length: 250)
Name: NF0679_high_20
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 15162851 - 15162654
Alignment:
| Q |
1 |
ttagtgaatgcaaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggatt |
100 |
Q |
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| T |
15162851 |
ttagtgaatgcaaattctaatattgttctaattcaagttgtatgaattctctttgcttattcttttggtgcatttctttgagtaggcttgctccgggatt |
15162752 |
T |
|
| Q |
101 |
ggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgatgtaaatactttggtagctaattgttt |
198 |
Q |
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| T |
15162751 |
ggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgatataaatactttggtagctaattgttt |
15162654 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 24509223 - 24509381
Alignment:
| Q |
11 |
caaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaattt |
110 |
Q |
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|||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| | |
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| T |
24509223 |
caaattctaatattattctaattctaattgtatgaat---ctttgcttattcttttggtgcatttcttttaataggctggctccaggattggtggaatat |
24509319 |
T |
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| Q |
111 |
tttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgat |
172 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||| ||| || ||||||| |
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| T |
24509320 |
tttagtgcagttcatggtttgagtcatggtaattttactttggtttcgttccactttatgat |
24509381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 24511389 - 24511225
Alignment:
| Q |
5 |
tgaatgcaaattctaatattgttctaattcaagttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtg |
104 |
Q |
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|||| ||||||||||||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
24511389 |
tgaacgcaaattctaatattattctaattctaattgtatgaat---ctttgcttattcttttggtgcatttctttgaataggctggctccgggattggtg |
24511293 |
T |
|
| Q |
105 |
gaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcattctacattatgat |
172 |
Q |
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|||| ||||| | ||||||||||| | |||||||||||||||||||||| | |||||| ||||||| |
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| T |
24511292 |
gaatgctttagagatgttcatggtttgagtcatggtaattttactttggttacgttctactttatgat |
24511225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 108
Target Start/End: Original strand, 9241396 - 9241463
Alignment:
| Q |
41 |
tatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaat |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| |||| |||||| | |||||||||||||||| |
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| T |
9241396 |
tatgaattatctttgcttattcttttggtgtgtttgattgaataggctgaccccgggattggtggaat |
9241463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 169
Target Start/End: Original strand, 19400682 - 19400790
Alignment:
| Q |
60 |
ttcttttggtgcatttctttgagtaggcttgctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggtttcat |
159 |
Q |
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||||||||||||||||| |||| |||| | |||| || | ||||||||| || | ||||||||||| ||| ||||||||| |||||| ||||||||| | |
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| T |
19400682 |
ttcttttggtgcatttcattgaataggttggctcgggaaatggtggaatagttcaatgcagttcatgctttgaatcatggt-attttaatttggtttcgt |
19400780 |
T |
|
| Q |
160 |
tctacattat |
169 |
Q |
| |
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||||| |||| |
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| T |
19400781 |
tctactttat |
19400790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 15514730 - 15514660
Alignment:
| Q |
38 |
ttgtatgaattttctttgcttattcttttggtgcatttctttgagtaggcttgctccgggattggtggaat |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| |||| || ||| |||| ||||||||||||| |
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| T |
15514730 |
ttgtatgaattatctttgcttattcttttggtgtatttgattgaataagctgactccaggattggtggaat |
15514660 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 13146690 - 13146643
Alignment:
| Q |
125 |
tggttttaatcatggtaattttactttggtttcattctacattatgat |
172 |
Q |
| |
|
|||||| | |||||||||||||||||||||||| |||||| ||||||| |
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| T |
13146690 |
tggtttgagtcatggtaattttactttggtttcgttctactttatgat |
13146643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Original strand, 17718632 - 17718664
Alignment:
| Q |
38 |
ttgtatgaattttctttgcttattcttttggtg |
70 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
17718632 |
ttgtatgaattatctttgcttattcttttggtg |
17718664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 23544516 - 23544451
Alignment:
| Q |
90 |
gctccgggattggtggaattttttagtgcagttcatggttttaatcatggtaattttactttggttt |
156 |
Q |
| |
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|||||||| |||||||||| || ||||||||||||||||| ||| ||||||| |||||||| |||| |
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| T |
23544516 |
gctccggggttggtggaatgctt-agtgcagttcatggtttgaataatggtaagtttacttttgttt |
23544451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 70
Target Start/End: Complemental strand, 51760024 - 51759992
Alignment:
| Q |
38 |
ttgtatgaattttctttgcttattcttttggtg |
70 |
Q |
| |
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||||||||||| ||||||||||||||||||||| |
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| T |
51760024 |
ttgtatgaattatctttgcttattcttttggtg |
51759992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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