View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0679_high_9 (Length: 365)
Name: NF0679_high_9
Description: NF0679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0679_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 34555866 - 34556180
Alignment:
| Q |
43 |
aagttactcaaagcatgtatggtttacaacatgccaattctgtgattgtcctgatcatgctagtccttggaagtttgtttctcaagtttcaactactttt |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34555866 |
aagttactcaaagcatgtatggtttacaacatgccaattctgtgattgtcctgatcatgctagtccttggaagtttgtttctcaagtttcaactactttt |
34555965 |
T |
|
| Q |
143 |
tagtcctctcttgttgagtgttagtgatagttctcaaattagattctgggagagtattcaggaacttttctc-ttttcatggtttttcctatacttcttt |
241 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
34555966 |
tagtcttctcttgttgagtgttagttatagttctcaaattagattctgggagagtattcaggaacttttctctttttcatggcttttcctatacttcttt |
34556065 |
T |
|
| Q |
242 |
tacagtcaactttacaccatttctgtctagttcctttcaaattttgaccttttcaataaccttcataatcatgaaaggttggtgagtttaagtctcttat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34556066 |
tacagtcaactttacaccatttctgtctagttcctttcaaattttgaccttttcaataaccttcataatcatgaaaggttggtgagtttaagtctcttat |
34556165 |
T |
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| Q |
342 |
gcttttacttcatct |
356 |
Q |
| |
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||||||||||||||| |
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| T |
34556166 |
gcttttacttcatct |
34556180 |
T |
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